K37230

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37230

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37230

Determination of introduced cDNA(s)

  • J013072A16 - Rice Full-length cDNAs - Original: J013072A16

    full reading [+] show sequence

    Nucleotide sequence: J013072A16 - full reading 
    GGTTCTGCCT CAGTGTGGCA AACACAGCTG CAAGAAACAA GGCCAACAAA 
    CCTCTTGAGT TTGATCAGCT GAAAATACCA AGTAAATATG GTTCAGAAAA 
    ACAAGATGAT CTGCGAGAGA AGGATAGAGT AAGAGCAATG CCAGGGCAGA 
    TGGAGGAAGC CGAGTTCAAC CAATATGCAG GATATGTCAC AGTGGATGCA 
    AAGGCTGGAA GGGCTCTGTT CTACTATTTT GTTGAGGCTC CTCATGATCC 
    TTTGAAGAAA CCACTGGTCC TATGGCTGAA TGGAGGCCCT GGTTGTTCGT 
    CTTTTGGAGC TGGAGCCATG CTAGAACTTG GACCTTTCTC TGTCCGTAGT 
    GACAACAAGA CATTGTACAA TAAACAGCAT GCATGGAACA CAGTGGCCAA 
    TATGCTGTTC GTTGACGTCC CAGCCGGCGT TGGGTACTCA TACTCCAACA 
    CTACATCAGA TTATTACAAC ATTGGTGACA AAAAGACTAC AGATGATGCA 
    TACATATTCC TCATCAATTG GATGAAGAAG TTTCCTGAGT ATCAGGGCCA 
    TGATTTCTTT ATAACTGGTG AGAGCTATGC GGGTCACTAT ATACCAGAGC 
    TAGCTAATCT GATTGTATCT AACAATAGAG CCATCAATTC AACAAACATC 
    AAGCTCAAAG GTGTTGCAAT AGGCAACGCA GATTTGCATG ACAACGTGAC 
    CCTAAGAGCA TCATTTGACT ACTATTGGAG GCATGCTATG ATTTCTGACA 
    GAGTCTACAG AGCCATCCAG ACTAGCTGTA GTTTCAATGA GACATACACT 
    AACGACTGCC AGAATGCCAT GAACTTAGCT AACAAGGAAA AGGGAAATGT 
    TGATGACTAC AACATCTATG CACCACAATG CCATGATGCT TCCAATCCCT 
    CTCCTTCTGG TTCCAGTGAC TCGGTGGCAT TTGGTGATCC TTGCACAAAC 
    CACTATGTCT CTTCTTATCT AAATAATCCT GAGGTCCAGA GAGCACTCCA 
    TGCAAACACC ACAGGGCTGA ACTACCCATG GATGGATTGC AGTGGACTTA 
    TATTTGATAA CTGGAAAGAC TCACCAGAGA CAATGCTGCC ATCAATCAAG 
    ACACTAATTT CAAGTGGCAC AAGGATATGG CTGTACAGTG GTGATATGGA 
    TGCAGTTTGT TCGGTCACGT CAACACAATA TGCACTAGAT ATTCTTGGGC 
    TACCTGTAGA AACATCCTGG CGTCCATGGC GCATCGACAA TGAGGTTGCT 
    GGCTATGTGG TTGGGTACAG AGGCCTGGTC TTTGCAACAG TCAGAGGAGC 
    AGGGCACATG GTCCCTTACT ACCAGCCTCG CAGGGCGCTA GCGCTGCTCT 
    CCTCATTCCT TGAAGGAAAG CTTCCCCCAG AATGATCTAG CAAGCCAAAC 
    ACCTTGCAAT CGTCATGCTC AGCATCCTAC CCCACAATCC AATGGAGTCA 
    TGGTATTTCA TAAGGAAGGC CCTAATATAT ATGTAGTACA CCCTCAGCAG 
    CACTTCATGG ATTAAGTAGT TCTGCTCAAA ATCGAGCATT CATGTAGATA 
    AAATAAATTC AGGTACTAGT ACTAAATCCT GAGAATTTTC ATACTTGGCC 
    ATCTCCTGAA TGAGGCCTGA TTAAACAAGA GCAAATTGGC CTGGTTGCTC 
    CACAGCAGTT GGGTGACAAA AATTCACCCA ACCAAACAGC TGCAGTCTTT 
    GTTGTAAGCA GGGTGACAGA TTTTTAGGAC TATATCATCT TTCTTTAAAG 
    CAATGTCATC TTCGTGGG

    Gene models with high sequence identity

    1. AT4G30610.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 3e-114; Score: 409.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase S10, serine carboxypeptidase 4.9e-137
    Gene3D no description 3.4e-135
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    superfamily alpha/beta-Hydrolases 5.5e-136
    FPrintScan Peptidase S10, serine carboxypeptidase 2.8e-26
    FPrintScan Peptidase S10, serine carboxypeptidase 2.8e-26
    FPrintScan Peptidase S10, serine carboxypeptidase 2.8e-26
    FPrintScan Peptidase S10, serine carboxypeptidase 2.8e-26
    HMMPanther SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE 6.9e-218
    HMMPanther Peptidase S10, serine carboxypeptidase 6.9e-218

    See the detailed result >

    AT4G30610.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Curator Summary
    Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease.
    Computational Description
    BRI1 SUPPRESSOR 1 (BRS1); CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 22 (TAIR:AT2G24000.1); Has 3492 Blast hits to 3440 proteins in 297 species: Archae - 0; Bacteria - 59; Metazoa - 632; Fungi - 854; Plants - 1543; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR