K37241

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37241

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37241

Determination of introduced cDNA(s)

  • J023100D18 - Rice Full-length cDNAs - Original: J023100D18

    full reading [+] show sequence

    Nucleotide sequence: J023100D18 - full reading 
    GACTCGCAGC CTCTCTCCCT CTCCTCTCCT CTCCGATCGA TCCTTCCCCT 
    CTCTCTCTCT CTCTCAATCC AGATAGGAAG GCGGCGAGCG AGAGCGACAC 
    GATGCAGGCG GTGAGGGAGG AGGAGGAGCA GGTGGTGGAG GAGGTGGTGA 
    GGGCGGGGGC GGTGGCAGAG GAGGAGGAGG GGCCGGAGGA GAAGGAGGTG 
    GCGATGGTCG GGGAGGAGAT GGCGGAGGCA GAGCACGACG AGGAGGAGGC 
    GGAGGCCGGG GCGTCGGCGA AGAAGAACCG GATCCAGGTC TCCACCAACA 
    AGAAGCCACT CTACTTCTAC GTCAACCTCG CCAAGAGGTA CATGCAGAAC 
    TATGACGAAG TTGAGCTCTC TGCACTGGGA ATGGCAATTG GCACGGTGGT 
    GACTGTTGCT GAGATCCTCA AGAACAATGG CCTGGCCACT GAAAAGAAGA 
    TCCTGACATC AACCATTGGC ACCAAGGATG AATCGAAGGG GCGGCTTGTC 
    CGTAAAGCCA AGATTGAGAT TCTTCTTTGT AAATCAGAAA ACTTCAACAG 
    TATAATGTCC AGCAAGAAAT CAGACCGCCC GAAATCCGCC GAGGAAGAGA 
    TCAAGGTCTG ATGATGAACA CCAACTTCTG ATCGATCAGA GCCTCCATGT 
    CCAGAGGTTA ACAAACCATG CTTGAGACAG TGGGAGGCAG CAGCAATGAT 
    CTGATTTTAG TAGTAACTAG GGGGTACCTT AGTCCTTGTC AAAGGAGGAA 
    TAGATCATAA TATTGTCAGG CATGCATACT ATGCAGGCAA AATTATGTCC 
    TTTCCTCTTC CTTGCAGCTC TGTCCAACTG AAACCTTCAA AAGAAATTAA 
    GCAAAATTTG CAACTGCGTC AGTACGGGGA GATGATGAAA TTAGTGGATG 
    TAGAAATAGA GTTTATCTCG GTCAGTCCCT AAGGCTGGGA CTGGAGGAGT 
    CCTATAATTA AGCTCTTACT TTTTCAGTTT GATGTTCCTT TGCTCATGTA 
    TGAAGCTTTT GGACAGAGAC AGACAGGTCA CTGTCATAAT GGAAGGCTGA 
    GGTTTCATGT G

    Gene models with high sequence identity

    1. AT3G04620.1 [+] show detail - Alba DNA/RNA-binding protein
      E-value: 8e-37; Score: 151.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 1.9e-13
    FPrintScan PRICHEXTENSN 1.9e-13
    FPrintScan PRICHEXTENSN 1.9e-13
    HMMPfam Alba, DNA/RNA-binding protein 1.1e-11
    superfamily AlbA-like 1.3e-27
    Gene3D no description 2.1e-43

    See the detailed result >

    AT3G04620.1

    Model type
    Protein coding
    Short Description
    Alba DNA/RNA-binding protein
    Computational Description
    Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775), Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G29250.1); Has 160 Blast hits to 160 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR