K37320

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37320

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37320

Determination of introduced cDNA(s)

  • J023127G15 - Rice Full-length cDNAs - Original: J023127G15

    full reading [+] show sequence

    Nucleotide sequence: J023127G15 - full reading 
    GGGGTGCGTC GCGGCCTCCG CTACCCGACG ACGCCGCCGC GGCCCGCGTC 
    ATCTCCTTGG CTCGCCGCCT GCGCCGTCGT CGCGCCGGTC TCCGTCGCCG 
    GGCGCCCTGC TGCTTCCATC GCATACTCTC GCCTCTGACC CCGAGTCCAT 
    CTCCCCGTCC CGGCGTCGCC TCGGCCTCGA CTCCCGTCTC CTCGAGGAGT 
    TCGCCCCGTC GCCTGCGGCC GATCTCCATC CATCCCGCGA GCGGCGGTGC 
    GGTGTTCCTG CTGCTTCCGC CTCCGGGCGG GAGAGGGAGG AGCGGGTGAC 
    CATGGTGAGC ATGGAGGTCA CCGATGAGAT GTTCAAGTGC ATGGAGGTTG 
    GGCTGGCCTT CCGGGACTAT AATGGAAGAA TCAGTTCTAT GGATTTCCAC 
    AGCAAGGCTA CAAATTACCT CGTGACAGCA TGTGATGATG AATCAATTCG 
    CCTATATGAC ATTCAAAATG CTGTGTGTTT GAAGACGATT AATAGCAAAA 
    AATATGGGGT TGAGCTTGTG TGCTTCACTG AAAACCCAAC TTATGTCTTG 
    CATTCTTCAA AAAATGGATG GGATGATTCT CTCCGTCTAC TCTCACTGGT 
    CAATAACTGT TTTTTGAGAT ATTTCAAAGG CCATCTAGAC AGGGTTGTTT 
    CTATCTCATT GTGCTCTGAG AACGGGAACA TTCTCTCTGG TTCACTTGAT 
    CGAACAGTTC TCCTATGGGA TTCAAGGGTT GAAAAAGCAC AGGGTTTGCT 
    GCGTGTTCAG GGGAGGCCTG CAGTTTCTTA TGATGATCAG GGTTTGGTTT 
    TTGCAATTGC ATATGGTGGC TACATAAGGA TGTTTGATGC TCGAAATTTT 
    GAGGAGGGGC CTTTTGATAT TTTCTCTGTC GGTAATGATG ATTCAGAAGC 
    CAATGTCATA AAGTTCAGCA GTGATGGCAG GCGGCTTCTT TTAACCACCA 
    AAGCTGGGCG TGTTCATGTG CTAGATTCAT TTCATGGCAA TAATATAGCA 
    ACATACAACG TGAAGCCAGT GGTAAGCAAT TCGACGCTGG AAGCATCATT 
    CAGCCCTGAT GGAAACCATA TAATATCTGG CTCTGGTGAT GGCAGTGTAT 
    ATGCTTGGAA TGTTAGGAGT GGAAAGGTTG CTCGCTGGGG AAGCACAGAT 
    AGTGAGCCAC CGCTAATTAG ATGGGCTCCA GGATCTTTGA TGTTCTTGAC 
    TGCATCTTCG GAACTGTCTT GTTGGGTCCC TGATCTATCT AAGCTGGGAT 
    CCTTTACTGT TAGTAAGTAA TTCGAATGGT ACGAGTTGTT GTTTGTGTAT 
    GCTCAGGCCT TTGTTCTAGC TGTTTGCAAA ATGACAATGT TAGGTAAAAA 
    TCTGAGCTGC AGTGGGTCAA GCCTCGGGTC

    Gene models with high sequence identity

    1. AT5G66240.2 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 3e-124; Score: 442.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily WD40 repeat-like-containing domain 1.7e-42
    HMMSmart WD40 repeat 0.024
    HMMSmart WD40 repeat 2.6e-05
    HMMSmart WD40 repeat 260
    HMMSmart WD40 repeat 0.013
    Gene3D WD40/YVTN repeat-like-containing domain 3e-37
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    FPrintScan G-protein beta WD-40 repeat, region 2.3e-05
    FPrintScan G-protein beta WD-40 repeat, region 2.3e-05
    FPrintScan G-protein beta WD-40 repeat, region 2.3e-05
    HMMPanther WD40 REPEAT PROTEIN SWD2 1.2e-111
    HMMPfam WD40 repeat, subgroup 0.0014
    HMMPfam WD40 repeat, subgroup 4.7e-05
    HMMPfam WD40 repeat, subgroup 7.3e-05
    ProfileScan WD40 repeat 2 9.372
    ProfileScan WD40 repeat 2 12.28
    ProfileScan WD40 repeat 2 11.444
    ProfileScan WD40-repeat-containing domain 18.668

    See the detailed result >

    AT5G66240.2

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G14530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR