K37326

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37326

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37326

Determination of introduced cDNA(s)

  • J023006N09 - Rice Full-length cDNAs - Original: J023006N09

    full reading [+] show sequence

    Nucleotide sequence: J023006N09 - full reading 
    GATATTCTCG TCATCATTGG AGGCTTTAGC AAGCAAGAAG AGAGGCAGTG 
    GTGGTGGTGG TGGAGGAGGA GCTAGCTAGC CTGTGCTTGC TGATCGGTGC 
    TGAGCTGAGG AATCGTTCGA TCGATCGGGC GAGATGGGGA GGGGAAGAGT 
    TGAGCTGAAG CGCATCGAGA ACAAGATCAA CAGGCAGGTC ACCTTCTCCA 
    AGCGCCGCAA CGGCCTCCTC AAGAAGGCCT ACGAGCTGTC CGTTCTCTGC 
    GACGCCGAGG TCGCGCTCAT CATCTTCTCC AGCCGCGGCA AGCTCTACGA 
    GTTCGGCAGC GCCGGCATAA CAAAGACTTT AGAAAGGTAC CAACATTGTT 
    GCTACAATGC TCAAGATTCC AACAATGCAC TTTCTGAAAC CCAGAGTTGG 
    TACCATGAAA TGTCAAAGTT GAAAGCAAAA TTTGAAGCTT TGCAGCGCAC 
    TCAAAGGCAC TTGCTTGGGG AGGATCTTGG ACCACTCAGC GTCAAAGAAT 
    TGCAGCAGCT GGAGAAACAG CTTGAATGTG CACTATCACA GGCGAGACAG 
    AGAAAGACGC AACTGATGAT GGAACAAGTG GAGGAACTTC GCAGAAAGGA 
    GCGTCAGCTG GGTGAAATTA ATAGGCAACT CAAGCACAAG CTCGAGGTTG 
    AAGGTTCCAC CAGCAACTAC AGAGCCATGC AGCAAGCCTC CTGGGCTCAG 
    GGCGCCGTGG TGGAGAATGG CGCCGCATAC GTGCAGCCGC CGCCACACTC 
    CGCGGCCATG GACTCTGAAC CCACCTTGCA AATTGGGTAT CCTCATCAAT 
    TTGTGCCTGC TGAAGCAAAC ACTATTCAGA GGAGCACTGC CCCTGCAGGT 
    GCAGAGAACA ACTTCATGCT GGGATGGGTT CTTTGAGCTA AGCAGCCATC 
    GATCAGCTGT CAGAAGTTGG AGCTAATAAT AAAAGGGATG TGGAGTGGGC 
    TACATGTATC TCGGATCTCT CTGCGAGCCA CCTAATGGTC TTGCGTGGCC 
    CTTTAATCTG TATGTTTTTG TGTGTAAGCT ACTGCTAGCT GTTTGCACCT 
    TCTGCGTCCG TGGTTGTGTT TCCGTGCTAC CTTTTTATGT TTTGATTTGG 
    ATCTTGTTTG AAAATAATCT TACCAGCTTT GGGT

    Gene models with high sequence identity

    1. AT2G45650.1 [+] show detail - AGAMOUS-like 6
      E-value: 1e-75; Score: 280.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Transcription factor, MADS-box 8e-33
    FPrintScan Transcription factor, MADS-box 8e-33
    FPrintScan Transcription factor, MADS-box 8e-33
    Coil coiled-coil 0
    ProfileScan Transcription factor, MADS-box 33.571
    ProfileScan Transcription factor, K-box 17.55
    PatternScan Transcription factor, MADS-box 0
    superfamily Transcription factor, MADS-box 9e-32
    HMMSmart Transcription factor, MADS-box 1.8e-41
    HMMPanther MADS BOX PROTEIN 2.5e-100
    HMMPanther MADS BOX PROTEIN 2.5e-100
    HMMPfam Transcription factor, K-box 6.9e-31
    HMMPfam Transcription factor, MADS-box 2.3e-29

    See the detailed result >

    AT2G45650.1

    Model type
    Protein coding
    Short Description
    AGAMOUS-like 6
    Curator Summary
    sequence suggests this encodes a MADS-box transcription factor
    Computational Description
    AGAMOUS-like 6 (AGL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, floral organ development; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 13 (TAIR:AT3G61120.1); Has 7294 Blast hits to 7293 proteins in 914 species: Archae - 0; Bacteria - 0; Metazoa - 630; Fungi - 307; Plants - 6281; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR