K37338

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37338

Determination of introduced cDNA(s)

J023131B01 - Rice Full-length cDNAs - Original: J023131B01

full reading [+] show sequence

GAGCTGCTCT CCACCAAGAG CTGCTCCGCC CCCCTACCCC GCAACCCGTT 
GCTTTGTGCC GCGCCTCGCT TTGGTCTTCA TCCGCCTCAG ATCTGATTCG 
TTCTAGGTTG GTCTGGGGAA GATGGCGATC ACGGTGAGGC GGTCGACGAT 
GGTGCGGCCG GCGTGGGAGA CGCCGCGGGT GCGGCTGTGG AACTCGAACC 
TCGACCTCGT GGTGCCGCGG TTCCACACCC CAAGCGTCTA CTTCTACCGC 
CGGGGCCCCG AGGGAGGGGG CACGCCGGAG GGGTTCTTCG ACGGGGAGCG 
GATGCGGCGC GCGCTGGCGG AGGCGCTCGT GCCGTTCTAC CCGATGGCCG 
GGCGGCTCGC GCGCGACGAG GACGGGAGGG TCGAGATCGA CTGCAACGGG 
GAAGGGGTGC TCTTCGTCGA GGCCGACGCG CCCGACGCCT CCGTCGATGA 
CTACGGCGAC TTCGCGCCCA CCATGGAGCT CAAGCGCCTC ATCCCTGCCG 
TTGATTACAC CGACGACATC TCCTCCTTCT CGCTCCTCGT GCTCCAGGTG 
ACCTACTTCA AGTGCGGAGG TGTCTCCCTT GGAGTTGGTA TGCAACACCA 
TGTGGCGGAT GGCATGTCCG GTTTGCACTT TATTAACTCA TGGTCTGACC 
TCTGCCGAGG AACTCAAATT GCCATCATGC CCTTCATTGA CCGCACTCTC 
CTACGAGCCC GAGATCCACC AACTCCATCA TACCCACATG TTGAGTACCA 
GCCTGCCCCA GCCATGCTGT CCTCCGTACC CCAGTCTGTT ACTGCTAATA 
AGACAACACC ACCTCCAACT GCTGTGGACA TTTTCAAGCT TACCCGCTCA 
GACCTTGGTC GACTGCGTTC GCAGCTCCCA TCAGGAGAAG GTGCACCACG 
TTTCAGCACA TATGCAGTTC TTGCTGCACA TGTCTGGCGA TGCGTATCTC 
TTGCACGTGG CCTGCCTTCT GAACAGCCCA CTAAGCTGTA TTGTGCCACT 
GATGGGCGAC AACGGTTGCA GCCTCCACTT CCAGAAGGTT ACTTTGGGAA 
TGTCATTTTC ACCGCCACTC CACTTGCTGA GGCAGGCAAG GTGACCAGTG 
GGCTGGCAGA TGGAGCAGCA GTCATCCAAG AGGCGCTAGA TAGGATGAAC 
GATAGCTACT GCCGCTCAGC ATTGGACTAC CTGGAGCTGC AGCCTGATTT 
ATCAGCATTG GTCCGTGGAG CACACACTTT CCGGTGTCCG AACCTCGGGC 
TCACCAGCTG GGTGCGCTTG CCAATTCATG ATGCAGATTT TGGATGGGGA 
AGACCAGTGT TCATGGGTCC TGGTGGCATC GCCTATGAAG GGCTGGCGTT 
TGTCCTCCCA AGCGCGAACA AGGATGGTAG CCTATCCATA GCCATCTCAT 
TGCAGGCTGA GCACATGGAG AAGTTCAGGA AGCTGATCTT CGAGGTGTAA 
GCAGACTACT TATGTTATGT CAGGGAGAAG TTGTAGAGCT AGAGTTCTCA 
GGTAAAATAC CTTCAAGTGA GTCATGGGGG CTATGCTCTT GCTCCTGTTG 
AGCAAATTGT CTGGCCACGT TCTCTTGTAC CTTAGCTTGC AAGGATATTT 
GGCCATCACC ACAGCCGTGT GACGATGTGA GCAACCAATA ATGAGCTGTT 
TTTTTGTTTT CGTTTAGGAT AGGAATCAAC AATGAAGAAA AGGTGCTGTA 
TTCTGTGAAA CTACATGGCA GTGTTGTTCT TACCAAAAAT ACATGACAAG 
TGAATTGGGT CAAGTTATTG CCTGTTGTAG CTCAAGTCGA TAGATGAACA 
TCATTGTACA GTACGAATGT ACGATACGAC TATAACAGCC TGATTGCCTA 
TGAACTGCAA GTAAATGCAT GTGAATAACT G

Gene models with high sequence identity

AT5G48930.1 [+] show detail - hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
E-value: 2e-163; Score: 572.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	6.6e-56
Gene3D	no description	1e-51
HMMPfam	Transferase	1.8e-103

See the detailed result >

AT5G48930.1

Model type: Protein coding
Short Description: hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
Curator Summary: At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.
Computational Description: hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G57840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR