K37338

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37338

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37338

Determination of introduced cDNA(s)

  • J023131B01 - Rice Full-length cDNAs - Original: J023131B01

    full reading [+] show sequence

    Nucleotide sequence: J023131B01 - full reading
    GAGCTGCTCT CCACCAAGAG CTGCTCCGCC CCCCTACCCC GCAACCCGTT 
    GCTTTGTGCC GCGCCTCGCT TTGGTCTTCA TCCGCCTCAG ATCTGATTCG
    TTCTAGGTTG GTCTGGGGAA GATGGCGATC ACGGTGAGGC GGTCGACGAT
    GGTGCGGCCG GCGTGGGAGA CGCCGCGGGT GCGGCTGTGG AACTCGAACC
    TCGACCTCGT GGTGCCGCGG TTCCACACCC CAAGCGTCTA CTTCTACCGC
    CGGGGCCCCG AGGGAGGGGG CACGCCGGAG GGGTTCTTCG ACGGGGAGCG
    GATGCGGCGC GCGCTGGCGG AGGCGCTCGT GCCGTTCTAC CCGATGGCCG
    GGCGGCTCGC GCGCGACGAG GACGGGAGGG TCGAGATCGA CTGCAACGGG
    GAAGGGGTGC TCTTCGTCGA GGCCGACGCG CCCGACGCCT CCGTCGATGA
    CTACGGCGAC TTCGCGCCCA CCATGGAGCT CAAGCGCCTC ATCCCTGCCG
    TTGATTACAC CGACGACATC TCCTCCTTCT CGCTCCTCGT GCTCCAGGTG
    ACCTACTTCA AGTGCGGAGG TGTCTCCCTT GGAGTTGGTA TGCAACACCA
    TGTGGCGGAT GGCATGTCCG GTTTGCACTT TATTAACTCA TGGTCTGACC
    TCTGCCGAGG AACTCAAATT GCCATCATGC CCTTCATTGA CCGCACTCTC
    CTACGAGCCC GAGATCCACC AACTCCATCA TACCCACATG TTGAGTACCA
    GCCTGCCCCA GCCATGCTGT CCTCCGTACC CCAGTCTGTT ACTGCTAATA
    AGACAACACC ACCTCCAACT GCTGTGGACA TTTTCAAGCT TACCCGCTCA
    GACCTTGGTC GACTGCGTTC GCAGCTCCCA TCAGGAGAAG GTGCACCACG
    TTTCAGCACA TATGCAGTTC TTGCTGCACA TGTCTGGCGA TGCGTATCTC
    TTGCACGTGG CCTGCCTTCT GAACAGCCCA CTAAGCTGTA TTGTGCCACT
    GATGGGCGAC AACGGTTGCA GCCTCCACTT CCAGAAGGTT ACTTTGGGAA
    TGTCATTTTC ACCGCCACTC CACTTGCTGA GGCAGGCAAG GTGACCAGTG
    GGCTGGCAGA TGGAGCAGCA GTCATCCAAG AGGCGCTAGA TAGGATGAAC
    GATAGCTACT GCCGCTCAGC ATTGGACTAC CTGGAGCTGC AGCCTGATTT
    ATCAGCATTG GTCCGTGGAG CACACACTTT CCGGTGTCCG AACCTCGGGC
    TCACCAGCTG GGTGCGCTTG CCAATTCATG ATGCAGATTT TGGATGGGGA
    AGACCAGTGT TCATGGGTCC TGGTGGCATC GCCTATGAAG GGCTGGCGTT
    TGTCCTCCCA AGCGCGAACA AGGATGGTAG CCTATCCATA GCCATCTCAT
    TGCAGGCTGA GCACATGGAG AAGTTCAGGA AGCTGATCTT CGAGGTGTAA
    GCAGACTACT TATGTTATGT CAGGGAGAAG TTGTAGAGCT AGAGTTCTCA
    GGTAAAATAC CTTCAAGTGA GTCATGGGGG CTATGCTCTT GCTCCTGTTG
    AGCAAATTGT CTGGCCACGT TCTCTTGTAC CTTAGCTTGC AAGGATATTT
    GGCCATCACC ACAGCCGTGT GACGATGTGA GCAACCAATA ATGAGCTGTT
    TTTTTGTTTT CGTTTAGGAT AGGAATCAAC AATGAAGAAA AGGTGCTGTA
    TTCTGTGAAA CTACATGGCA GTGTTGTTCT TACCAAAAAT ACATGACAAG
    TGAATTGGGT CAAGTTATTG CCTGTTGTAG CTCAAGTCGA TAGATGAACA
    TCATTGTACA GTACGAATGT ACGATACGAC TATAACAGCC TGATTGCCTA
    TGAACTGCAA GTAAATGCAT GTGAATAACT G

    Gene models with high sequence identity

    1. AT5G48930.1 [+] show detail - hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
      E-value: 2e-163; Score: 572.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 6.6e-56
    Gene3D no description 1e-51
    HMMPfam Transferase 1.8e-103

    See the detailed result >

    AT5G48930.1

    Model type
    Protein coding
    Short Description
    hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
    Curator Summary
    At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.
    Computational Description
    hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G57840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR