K37345

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37345

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37345

Determination of introduced cDNA(s)

  • J013123A10 - Rice Full-length cDNAs - Original: J013123A10

    full reading [+] show sequence

    Nucleotide sequence: J013123A10 - full reading 
    GGTGGACGAC GGCGGCGGCG ACGATTCCAA CGAGAGGAGA AGCGCAAGGA 
    GGATAGGCGG CGGCGGCGAC TGGGCGAAAG TGATCAGAGC TCGCGAGGAT 
    GAAGGCGACG GTGAAGGGCA GGTACGAGGG CGACAAGGCC ACGGCCGCCG 
    CCACCCTCGC CTTCACCCCC TCCGCCGCCG ACCTCCGCTT CAAGGCCTCC 
    GCCACCGATG CCGCCTTCGC CCGCGGGCCC TCCCTCGAGG GCCTCATCCT 
    CACCCTCGAG AAGCCCGGCT CCTTCCTCCT CGACCTCAAG CCCCACTCCA 
    AGGATGTGCG CTTCCAATTC ATGAACTCCG CGCTGCTGCT CGACCGCCGC 
    GTCAGCCTCA CCTACACGCA CTCCACCACC CTCTCCCCGG GCCCCGCCAA 
    GCTGCCCGCC CGCACCGCCC TCGACGGCTC CCTCACCTTC GATCCGGCCA 
    ACAAGCTCAG CCTCTCCCAC ACGCTCGGCT CCTCCGGATG CCGCGTCAAG 
    TACTCCTACG CGCACGGCCA AGACCGCCTC ACCACCATCG AGCCCTGCTT 
    CGACACCGCT AACAACGCCT GGGACTTCGC CGTCACCCGC AAGTTTCAAG 
    GAGGGGATGC CATCAAGGCC ACCTACCAAG CCTCCACCAA GCTCCTCGCC 
    CTCGACTGGA CCAGGGACTC CAAGATCGGT GCCTCCTTCA AGGTCGCAGC 
    GTCATTTGAT CTGTCTGACC AAAGCAAAGC GCCAAAGCTA ATAGCGGAGA 
    GCACGTGGAA TTACGAGATC TGATTGCCTC TTCTAGGAGG CAGGCAACTC 
    CTGCTTAAGA AGCACCCTTG TCATACTGGT TGTCTTGTAC TTGGGAACTA 
    TTCTTTCTGG GTGCAACAAT TTCAATACCT ACTGCCCTTT GTTCATTTTT 
    GGCTGCCCTA TGATTGGAGT TGTCATGGCG ATGCTACGGC ATTGACAATG 
    AACACCGATT ATCTTTTACT ATATTCTCTA ATGCACATGA TATGATTG

    Gene models with high sequence identity

    1. AT5G42960.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 2e-55; Score: 213.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 4.9e-09
    FPrintScan PRICHEXTENSN 4.9e-09
    FPrintScan PRICHEXTENSN 4.9e-09

    See the detailed result >

    AT5G42960.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR