K37421

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37421

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37421

Determination of introduced cDNA(s)

  • J023062N08 - Rice Full-length cDNAs - Original: J023062N08

    full reading [+] show sequence

    Nucleotide sequence: J023062N08 - full reading 
    GTGCCGGAGC GCCGCCGGCG GCCACCAGCT CCACGCGCTG CTCGCCAAGC 
    TCGGCCTGCT CCACCGCTCT GAATTTCTCT CCGCTCTCCT CTCTCGCCTC 
    CCGCCTTCGC CGTCGGCGCT CTCCCTCCTA CTCGAGGCAC CCCCGGCCGT 
    CCTCTCGCCG TCACTCGTCT GCCCGGTAAT CGTCGCCTTC TCTTCCTCCC 
    AGGCCCCGTC CTCCGCGCTC CTCCTCTTCA ATCATGCCTC CTCGTGCTCC 
    CTCCCCACCC CGCTTCCCAC CTTCCCTGCG CTACTCAAAT CCTGCGCCCG 
    CGCATTCAAC CACAGCTCTC GCGCCAGTGC CGCGTCGGTC TTCGTCTCCA 
    AGGGGATGGA GCTGCATTGC CGTGTCTTGA AGCTTGGCTG CGGGAAGGAT 
    CGCTATGTGC GGAATGCGCT CGTCTCCATG TATGGCAAGT TCGGTCGCCT 
    CGGGGATGCA CGGAAGGCGT TCGATGAAAT GCCTGACAAG AATGCCGTCT 
    CCTGGAATGC GTTGGTCGGG GCTCATCGTG CCGCTGCAGA TTGGATGGGT 
    GCAGACCGCG TGTCTCAGGC CATGCCAGTG AGGAACTTGT CATGGTGGAA 
    TGCTGAGATC GCGCGAAATG TGAGGATCGG GTATATGGAT GAGGCTGCAA 
    GGATTTTCAG CGAAATGCCA GAGAGGGATG CTGTATCATG GAACTCTTTG 
    ATCAGTGGCT ACACAAAGCT CGGCAAATAT ACCCAAGCAT TGGGGATTTT 
    TCAAGAAATG CAGGAGAATG GCATTCAACC TACTGAGCTT ACACTTGTAC 
    TAGTCCTTGG GGCTTGTGCA AAGATTGGTA AGCTGGACCT GGGGACAAAC 
    ATCCACAGAA ACCTTCAGAA CAAGGGCATT GTAGCTGATG GCTTGGTTGG 
    CAATGCACTC ATTGATATGT ATGCAAAATG TGGGATGTTG GATCTTGCCA 
    AGAAGGTCTT TGACAGAATG TCTATGAGGG ATATTACATG CTGGAATGCG 
    ATGATCGTTG GTTTCTCTGT GCATGGCTGC TCACGTGAGG CTCTAGAGCT 
    CTTTGATTCG ATGAAGATTG AGCCAAATCC TGTCACATTT TTGGGTGTCT 
    TGACCGCCTG CAGCCATGGT GGCCTAGTGA ATGAGGGGAG GAAATATTTT 
    AATAGCATGA TTGAGGACTA CAGAATTGTT CCTGATGTTA AGCATTATGG 
    CTGCATGATT GATATGCTTT GCCGCTATGG AAAAATTGAA GAAGCTTATC 
    TGATGATTAA AGAAAACCCT TCAACAGCAA GCTCTGTTCT GTGGAAGATG 
    TTGTTGGCAG CTTGCCGAGT GCATGGGCAC ATCGATCTTG CTTACATGTT 
    TTTTCATGAA CTACGTGAGT TGATTCTAAC TGATAATGGA GGACTTGTCA 
    CAATATCAAA TGTTTATGCA GAAGCGAAGA GATGGGATGA TGTCGAGCAT 
    CTGAGAATGA AGGTCAGATG CAACAGTGCT TTGAAGCATG CTGCACATAG 
    TCAAATGGAC GTAATGTAAG CAATACATCT GCCTGAAACT ATAGGAAATA 
    ATGATCATTC TTAATTCTAG AAGCCCTAGC TCTTGAGTTT TGCTGGGCTG 
    TAGCTCCAAT AATTTTAATG TTGGTAGCTT CATTTTTATC TTGATGTTGG 
    TGTCAAGTCA TTTTAAGTAC AGAAGGGTTA AGAAGGGCAA ATTATAACTA 
    TTGTTATGGC ATGCTTGTTT ATCTTAAGAT TTCCAGATGG ACATATGTGT 
    GATGGCACAA GAAAATTAAC CGATACCGTT GCTTGAATGG TTTTGTTGAT 
    CAACAACAAA TGTTTCTGAA ACTGAATCAT GACTTCCGGG CTAATTGAAT 
    GTTTTAGACA TGAATAACTG GCAGCAAAAG AATTGCTCAC ATCATTGCCC 
    CTTCACTCAT ATCACTCAGT ACCAAAGGTT TGGGCAGAAG CAGAGATGGA 
    GTGAAGTTGA GTATCTGAGA ACAGAGATGA TCAGATACAA TGCCTCAAAG 
    CATGCTGCAA ACAGCCAAGT TAATTTTAGG TAGCCAATAA ACCCGCCGCA 
    AGCTGTACAG TGTAATATTC AGCTTCATTT CCAGAAGTCC ACTTTGCTAC 
    CACTTCTAGA CTGTAGTTCC AACGGGACAA TACTGCTGCT AATTCTCAAA 
    GTGAAGACTG CTGAACTGTG AATTTCGTAA GAACTTTGAG TCGTATTAAA 
    CTATTAATGT ATTGATGCAC AGCAGATGGG AGATAACCTT CTTCTTGTGC 
    TGAAATGTGC CTGTTCCATC AAATGCCTTG GATTTTTCCA CTGAGAGTCC 
    TCGTTTTTGA GTATGTCACA ATCATTGTGG TTAGGACTTT GGAGAAGTGC 
    ATTGTTTCCC AACATGCATC AGACAAAATG AAAATATTGG GTTTCTATCC 
    ATTTCCATTG CAATATGTGA AATTTTGGAT GTCTACTCCA CTTAGTGTCT 
    GTTGTCAGTA AACTGCACTG GCTAAATTGG CTACTGAAAT GCAGAAAAGG 
    AGAATGAAGT TGAACTCTGT GCTCTGCCTA GAAGTGATTT CAATGCGAAC 
    GCTTCGCTAG ATCAGTAGCC CATGAAAGGT GGAATTTTCA GCAAGTACCA 
    AAGCAAGTAG TATTTCGGTG GAAGTTAAAT ACCATGGTGA CGAGCTCGAG 
    AAGCTGATCC AGATGGGCAA ACACAAATAG GATTGCAGAA TGCATTCTTT 
    CTTGGCTTCA TTTTTAAGAT TGCCAGATGG TAACTGTAAT ATTTGCTATA 
    CAATGCTGGT GAACGACATT CCAGTAAAAG TTTTAAGTTT CGGTGTATAT 
    GGAGCAATGG AAATTTATAT GGGCACAAAT GAAACAGTTC TGGAGACTCA 
    GTAAGAGCTG AATATTAGGG GCAAGAAGGC ATGTAGTTGG TTGGTGACAT 
    TAGGAGCATG GAGTTGATGC CATTCATGTG CATGCGAGGT TTTATCTGAC 
    CTATCGAGAT GAGGATCAAA TGAACAGAGT AGTATACGTT GCTAGGCGAC 
    GTCTCTGGAT GAATTAATGG ATCGATCAGG TTGCTGCAGG CTGCTATAGC 
    TCTGCACCAG GACCAAGCAC TGCACATTAC TGTATCTGTA TGGTCACACT 
    GATGAAAGGA GAAATTTGCG AAGTAGCTGC TGATCCATCT GCCCAATCGA 
    TAGGCTACAA ATAAATGAAG CTGGTAGCTT TCATTCAATA AATATGGATT 
    CCTTCAACAG TGGAGTACCC ATTGCTCTGT TTGCCCACAG ATGGAATTGA 
    AGCTGCGTGT CAAATGTCAA TCTTTCTAAA GACCTGTCTT TTAATATGTA 
    TGCTTGTGAA TTGTATTTTG TATATACGCC ATACATAAAA ATGATACTGC 
    CATTAAGTCA TTACTGTTGC AATATTCTAT TCACAATGTA AATTATCTAC 
    TGTTGTTATG GTGT

    Gene models with high sequence identity

    1. AT1G74630.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 1e-79; Score: 295.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Pentatricopeptide repeat 9.251
    ProfileScan Pentatricopeptide repeat 13.976
    ProfileScan Pentatricopeptide repeat 7.07
    ProfileScan Pentatricopeptide repeat 9.361
    ProfileScan Pentatricopeptide repeat 7.278
    ProfileScan Pentatricopeptide repeat 5.81
    ProfileScan Pentatricopeptide repeat 7.278
    ProfileScan Pentatricopeptide repeat 7.805
    HMMPanther SELENIUM-BINDING PROTEIN 3e-147
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3e-147
    HMMPfam Pentatricopeptide repeat 0.0022
    HMMPfam Pentatricopeptide repeat 0.45
    HMMPfam Pentatricopeptide repeat 0.00000000099
    HMMPfam Pentatricopeptide repeat 0.000028
    HMMPfam Pentatricopeptide repeat 0.000005
    HMMPfam Pentatricopeptide repeat 0.41
    HMMPfam Pentatricopeptide repeat 0.012
    HMMTigr Pentatricopeptide repeat 0.08
    HMMTigr Pentatricopeptide repeat 0.0000000002
    HMMTigr Pentatricopeptide repeat 0.7
    HMMTigr Pentatricopeptide repeat 0.72
    HMMTigr Pentatricopeptide repeat 0.000055
    HMMTigr Pentatricopeptide repeat 0.00071
    HMMTigr Pentatricopeptide repeat 1.5
    HMMTigr Pentatricopeptide repeat 1.4
    superfamily TPR-like 5e-28

    See the detailed result >

    AT1G74630.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 36912 Blast hits to 14171 proteins in 263 species: Archae - 0; Bacteria - 21; Metazoa - 80; Fungi - 95; Plants - 36068; Viruses - 0; Other Eukaryotes - 648 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR