K37424

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37424

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37424

Determination of introduced cDNA(s)

  • J023130N03 - Rice Full-length cDNAs - Original: J023130N03

    full reading [+] show sequence

    Nucleotide sequence: J023130N03 - full reading 
    GACGTTGCTC GTCGTCGTCG TCGTTGTCGG AGTCGCCATG TCGTCGGCGG 
    CGCGCCACCA TTGCTCCGGT CTCCGGGAGC GGCTAGGCTG CGTGCAGTGC 
    AGCTTCTGCG CCACCGTGTT GCTGGTGAGC GTGCCGTGCA GCAGCGTGCT 
    CAGGGTGGTG GCCGTGCAGT GCGGCCACTG CTCCGGCATC CTCTCCGCCG 
    TCAACCTGCC GCCGTCGCCG GTGTCGGCGT CCATCGAGCT GACTCCACAG 
    GTATGATTCT TTTCAGCTTC AGTTGATGAA AATGATTGGA TGATGTGCAG 
    AATCTGTACT AACCTGACGA GATGAAACAG GAGCTGGACG CTGGTCCGCC 
    GCCGGGGGAG TACTCGGATG AGAGCAGCGG AGACGATAGG GAGGGAAGAG 
    ATGCAGAGGA CGATGCACCT GCACCTGCTG CTGCTGCTGT TGCAAACAAG 
    CGTACTTGTC CTGCTGTTTT CTCTTGATCA GTTTGTCTGA AGATGATAAT 
    GACGATCATG ATGGGCTAAT TAAGCATGTT CTTGAAACAT TTCTGCAGCG 
    CCAGGGAGGA AGCAGCGGAC GCCGTCTGCC TACAACTGTT TCGTCAAGTA 
    ATAGCCCAGA AAAACAAAAT GAGTATATAC TGTGATCATA GCTAGACTGA 
    GGGCCAATTG CAGAGCATCA CCTAGAGCAT ACATGGCTCT GAATATTCTT 
    ATATAAATGT CCCCCCTCGA TATTCAGGTG AGACTTGAGA GGTGATGGAA 
    GTATTAACAT TCCTTTTTGT TGTCAGGGAA GAGATAAAGA GGATCGAAAG 
    CATGGAGCCT AACATCACCC ACAAACAAGC ATTCAGCACA GCTGCTAAAA 
    ACTGGGCTCA CTTACCCAGA ATCCAGCAGA AGCGAGGCAG GGATAGCTGC 
    TGAACTACAC CTGCAAAACA AGGCAAACGA AATTAATGGG CACGAGTACC 
    AGGCAGCAGT GAGCTACTAG GCAGGTTCAG GAAAAATCCA AGTTGTAGCT 
    GTCCAGATAA TCTTGTTGCA CATCTCAAGC ACGTGCTTCC TGAATTCTTC 
    TCTTTCATGT GATAAATACA GCAAGTTTTT TTTTTCGACT ACTCGGTTCT 
    TAACC

    Gene models with high sequence identity

    1. AT2G26580.2 [+] show detail - plant-specific transcription factor YABBY family protein
      E-value: 3e-07; Score: 53.10

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam YABBY protein 6.1e-15
    HMMPfam YABBY protein 1.5e-13

    See the detailed result >

    AT2G26580.2

    Model type
    Protein coding
    Short Description
    plant-specific transcription factor YABBY family protein
    Computational Description
    YABBY5 (YAB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 458 Blast hits to 449 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR