K37424

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37424

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37424

Determination of introduced cDNA(s)

  • J023130N03 - Rice Full-length cDNAs - Original: J023130N03

    full reading [+] show sequence

    Nucleotide sequence: J023130N03 - full reading
    GACGTTGCTC GTCGTCGTCG TCGTTGTCGG AGTCGCCATG TCGTCGGCGG 
    CGCGCCACCA TTGCTCCGGT CTCCGGGAGC GGCTAGGCTG CGTGCAGTGC
    AGCTTCTGCG CCACCGTGTT GCTGGTGAGC GTGCCGTGCA GCAGCGTGCT
    CAGGGTGGTG GCCGTGCAGT GCGGCCACTG CTCCGGCATC CTCTCCGCCG
    TCAACCTGCC GCCGTCGCCG GTGTCGGCGT CCATCGAGCT GACTCCACAG
    GTATGATTCT TTTCAGCTTC AGTTGATGAA AATGATTGGA TGATGTGCAG
    AATCTGTACT AACCTGACGA GATGAAACAG GAGCTGGACG CTGGTCCGCC
    GCCGGGGGAG TACTCGGATG AGAGCAGCGG AGACGATAGG GAGGGAAGAG
    ATGCAGAGGA CGATGCACCT GCACCTGCTG CTGCTGCTGT TGCAAACAAG
    CGTACTTGTC CTGCTGTTTT CTCTTGATCA GTTTGTCTGA AGATGATAAT
    GACGATCATG ATGGGCTAAT TAAGCATGTT CTTGAAACAT TTCTGCAGCG
    CCAGGGAGGA AGCAGCGGAC GCCGTCTGCC TACAACTGTT TCGTCAAGTA
    ATAGCCCAGA AAAACAAAAT GAGTATATAC TGTGATCATA GCTAGACTGA
    GGGCCAATTG CAGAGCATCA CCTAGAGCAT ACATGGCTCT GAATATTCTT
    ATATAAATGT CCCCCCTCGA TATTCAGGTG AGACTTGAGA GGTGATGGAA
    GTATTAACAT TCCTTTTTGT TGTCAGGGAA GAGATAAAGA GGATCGAAAG
    CATGGAGCCT AACATCACCC ACAAACAAGC ATTCAGCACA GCTGCTAAAA
    ACTGGGCTCA CTTACCCAGA ATCCAGCAGA AGCGAGGCAG GGATAGCTGC
    TGAACTACAC CTGCAAAACA AGGCAAACGA AATTAATGGG CACGAGTACC
    AGGCAGCAGT GAGCTACTAG GCAGGTTCAG GAAAAATCCA AGTTGTAGCT
    GTCCAGATAA TCTTGTTGCA CATCTCAAGC ACGTGCTTCC TGAATTCTTC
    TCTTTCATGT GATAAATACA GCAAGTTTTT TTTTTCGACT ACTCGGTTCT
    TAACC

    Gene models with high sequence identity

    1. AT2G26580.2 [+] show detail - plant-specific transcription factor YABBY family protein
      E-value: 3e-07; Score: 53.10

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam YABBY protein 6.1e-15
    HMMPfam YABBY protein 1.5e-13

    See the detailed result >

    AT2G26580.2

    Model type
    Protein coding
    Short Description
    plant-specific transcription factor YABBY family protein
    Computational Description
    YABBY5 (YAB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 458 Blast hits to 449 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR