K37431

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37431

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37431

Determination of introduced cDNA(s)

  • J013153E21 - Rice Full-length cDNAs - Original: J013153E21

    full reading [+] show sequence

    Nucleotide sequence: J013153E21 - full reading 
    GATCCTCTCT TTTTCTTCTT CTTCTTCTTC TCCCCCCTTC CTCTGCATCG 
    AAGCTGCTCC CTGCAGTCGC AGGATCCCGA ATCCGAGCTC CTCCCCGCCA 
    TTGCCGCGGG GGCGCGGCTT CTTGATCTGT GGAATTCGAT CGGGGGGCGC 
    GGGGGGCGCG GAAAGGTGGG ATTTTTGCGG CGAGATTTGG GACCCATCTT 
    TGGCCCGTTT CTTGTGGATT TCGTTCGAGT TCTTGTGGTT TTGGATCGGG 
    TTGGTGGTGG TGGTGGAGCT GGAAAAAGGT GGTTACCTTG GCCACCAAAT 
    TCCCAACCCT TTTTCTGTTC AGATTCTTGG CGTTTTCTTG CGCAAATTTT 
    AGCTAGGGTT GGTGTGGATT CCCGCTCGTA CCCCCATTAG CTCGTGATTC 
    GTATCCAGGT TCGTGTAAAA ATCTGGGAGT GGTGGAGATT TGGGAGGTTT 
    TCTCCTTCCT GTGCTCTATG AGGAGCAGCT TCCTGTCGGA ATCGCCGTGC 
    GACGAGCAGC ATATCCATGG ATTCAATCCG CAGTCATGGC TGCAGGTGGA 
    GCGTGGGAAG CTGCCCAAAT CGTCCTACTC GCCTTCCTCT ATCGAGTCGC 
    TGATAAAGAT CGCGGAGCCG CCGGTCGTAC CATTGTATAA GCCCTTGGAT 
    TATGTGGAGG TGCTGTCCAG GATCCATGAG GAGCTCGAGC AATGTGTGCC 
    GAGCGAGCGG CCAGGGCTGT ATTTGATACA GTCCCAGGTG TTTCGGGGAC 
    TTGGGGAGGC GAAATTGCGC CAGAGGAGCC TGCATTCTGC GTGGCGCTGC 
    GCGACCACTG TGCATGAGAA GATTGTGTTT GGGGCATGGC TGCGGTATGA 
    GAAGCGGGGG GAGGATATCA TATCCGATGT CCTCGCGTCA TGTAGGAAGT 
    GTTGCAAAGA GTTTGGGCCA CTTGATGTCG CATCCGAGAT GCCCGAGGGA 
    GACTTTGAGA TACTTGGTTC TTGTGATATC GGCACATCTT CGAAAGTTTC 
    CCCTGTAGTG ACCTTCCAAA TAAGGGATGG GAAGGTGACA TGCAATAGGT 
    GCAAGATTGC TTCTCTATCG ATCCCTTTCT GGTCCATGCT CAATGGACCA 
    TTCACTGAAT CTCAGCTTGA TCTTGTTGAT TTGTCGGAGA ATGGTATCTC 
    ACTGGAGGGC ATGAGGGCTG TATCTGAATT TAGTTGTACA TATAGCTTAG 
    AGGATTTGCC TTTGGAAACC TTGTTGGAGA TCCTGGTGTT TGCAAATACA 
    TTTTGTTGTG ACAGGCTTAA AGATGCGTGT GATAGGAAAC TAGCTTCATT 
    TGTTTCATCA AGGCAGGATG CTGTTGAGCT CATGGCATTG GCATTTGAAG 
    AAAATGCACC AGTCCTCGCT GCATCTTGCT TGCAAGTGTT TCTGCAGGAG 
    CTTCCAGATT GTCTAAATGA TGAGCATGTA GTTAGCCTAT TCCTAAGTGC 
    AACTGAACAG CAGCAATGCA TCATGGTTGG ACATGCCTCC TTTTTGTTAT 
    ATTGCTTGCT TAGTGAGGTT GCAATGAACA TTGATCCAAG GACGGAGGCA 
    ACCGTGTGCT TGTCAGAGAA GCTTGTTCAA TTGGCTGTTA CTCCTACACA 
    GAAGCAAATA GCTTTTCATC AGCTTGGATG CATTAGGCTT TTAAGGAAGG 
    AATATAATGA AGCTGAACAC CAATTTAGTG TTGCCTTCTC AGCTGGTCAT 
    GTGTATTCCA TTGCTGGTCT TGCTAGAATT GCTGGTACAA GAGGTAGAAA 
    GGGTTTGGCT TATGAGAAGC TCAGTTCGGT CATAACATCA AGTGTACCAC 
    TAGGATGGAT GTATATGGAG AGATCTCTGT ATTCAGAGGG TGATAAAAAG 
    TTGGGTGACC TTGACAAAGC AACTGAGCTG GATCCAACTC TCACTTACCC 
    TTACATGTAT CGAGCTGCAT CCTTGATGAG AAAAAAGGAT GCAAGACTTG 
    CCTTAGAGGA AATCAACCGA CTATTGGGTT TCAAGCTAGC GTTGGAATGC 
    TTGGAGCTCC GGATTTGTCT ATATCTTGCT CTCGAAGACT ACAAATCTGC 
    AATTTGTGAT ATCCATGCTA TCCTTACACT TTCTCCTGAG TACCGAATGT 
    TGGAAGGTCG TGTAGCTGCT TCCAAAATAG GCACTCTTCT TGGGGCACAT 
    GTCGAGCAGT GGAATACAGC TGAGTGTTGG CTTCAGCTGT ATGAACGCTG 
    GTCATCAGTG GATGATATTG GTTCCCTTTC AGTGATTTAC CGGATGCTTG 
    AGTCAGATGC AGCAAAAGGT GTTTTGTATT TCAGACAATC TTTGCTGCTC 
    CTTAGGTTGA ACTGTCCTGA GGCTGCAATG CGCAGTTTGC AATTGGCACG 
    GCAACATGCA GCAACTGAGC ATGAACGGCT AGTGTATGAG GGGTGGCTTT 
    TGTACGATAC TGGGCATTGT GAGGAGGCCC TACAAAAAGC AGAGGAATCT 
    ATTTCTATTC AAAGGTCATT TGAGGCTTTC TTTCTGAAAG CCTATGTTTT 
    GGCTGACTCA GGTGTTGATC CTTCTTATTC TGCGACTGTT ATATCGCTTC 
    TTGAAGATGC ACTAAAGTGC CCTTCAGACC GGCTTCGGAA GGGTCAGGCT 
    TTGAACAATC TTGGTGGTGT TTATGTTGAT TGTGAGAAGT TAGACGCAGC 
    AGCTGATTGC TACACGAGTG CTTTGAAGAT CCGACACACT AGGGCACATC 
    AAGGTCTTGC CCGTGTTCAT TTTCTCAGGA ATAACAGGGA TGCTGCATAT 
    GAAGAAATGA CAAAGTTGAT AGAGAAAGCT AAAAACAATG CTTCAGCTTA 
    TGAGAAACGT TCGGAATATT GTGAACGAGA GCAAACTATG ACAGATTTGC 
    AAATAGTGAC CCAGTTGGAT CCATTACGTG TTTACCCGTA CAGATACCGT 
    GCAGCAGTAC TGATGGATAG TCACAAGGAG AAAGAAGCAA TTGCAGAGCT 
    AACCAGGGCG ATTGCATTCA AAGCTGACCT CCACCTATTG CATCTTCGCG 
    CGGCGTTCCA CGAGCATATC GGGGATGTCC CCAGCGCTCT TCGCGACTGT 
    CGAGCCGCCC TTTCTCTGGA TCCAAATCAC CAAGAAATGC TGGAGCTTCA 
    GAAACGCGTG AACAGCCAAG AGCCCTAACA AAAAATTGTG GTGCCACTTG 
    GTGCATTGCA TACCATGATT TTTGCGCTCA TAGGTGCGCC TCATGACAGC 
    CCTTGACTCC ATCCAATTTT CTTCATTTCT TTGTTAATTA CTGTAATATG 
    ATGTATTCAG CAAGAAAGGA AAAATGAAAG CACTAGTTCT TTGGAAGCCA 
    TCATCGATGA ATCTTAGCAC TCGATGACTG CTGGCTTTTG TAAAAGTAAT 
    GCCTAATCAC TGAACTGTTG TCTCCTGGAA ATGAAAATCA CCGTGCATGA 
    TGTAACTTTC AGGCCCCTAT TTTAGCTCCC AATTTTTTCT GTAATGAACC 
    TTGCATGCAA ATTTTGCGCC ATTTTAGACC TACTTTACCT GTGGGTTTTA 
    CAGTCATCAG ATGGTGTATT AACATGTGTA AATGACGCGT CCATTATATT 
    TAGGGGAGTT TCTGCTTTCC CTTCAGAGTA AAGTACAGCT TGGTTGCACT 
    TGCAGC

    Gene models with high sequence identity

    1. AT4G02680.1 [+] show detail - ETO1-like 1
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    superfamily TPR-like 4.1e-23
    superfamily Protein prenylyltransferase 0.00000000000018
    superfamily BTB/POZ fold 0.0000000023
    ProfileScan Tetratricopeptide repeat 5.074
    ProfileScan Tetratricopeptide repeat 8.113
    ProfileScan Tetratricopeptide repeat 6.933
    HMMPanther TETRATRICOPEPTIDE REPEAT PROTEIN, TPR 0.0000016
    HMMSmart Tetratricopeptide repeat 90
    HMMSmart Tetratricopeptide repeat 120
    HMMSmart Tetratricopeptide repeat 0.13
    HMMSmart Tetratricopeptide repeat 0.45
    Coil coiled-coil 0
    Gene3D BTB/POZ fold 0.00083
    Gene3D Tetratricopeptide-like helical 0.000075
    Gene3D Tetratricopeptide-like helical 0.0000000000000039

    See the detailed result >

    AT4G02680.1

    Model type
    Protein coding
    Short Description
    ETO1-like 1
    Curator Summary
    Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL1 also interacts with and inhibits the activity of ACS5.
    Computational Description
    ETO1-like 1 (EOL1); CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT3G51770.1); Has 651 Blast hits to 563 proteins in 153 species: Archae - 10; Bacteria - 244; Metazoa - 131; Fungi - 2; Plants - 163; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR