K37438

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37438

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37438

Determination of introduced cDNA(s)

  • J033074G19 - Rice Full-length cDNAs - Original: J033074G19

    full reading [+] show sequence

    Nucleotide sequence: J033074G19 - full reading 
    GGCTTGAAGG GAAAGTAAGA AAGAAAGAAA AGAAAAAAAA AAGGAAAATC 
    GTGTCTCGTC TCGTCTCGTC TTCGTCTCCC CCGATTCCCG AGCAGCTTCT 
    CGAAACCCTC GCGGCCTCGA TTCCGGCGAT GGCGGAGCCC AACCCGCAAG 
    TGGAGAGGGA GGTGGAGGTG GAGGAGGTGA GGAGGCCGAA GCTGAGGTAC 
    TTGGAGTTCG TGCAGGTGGC GGCAGCGCAG GCGACGATCT GCCTCGCGGG 
    GCTCTACGCG CTTGCCAAGG ACCACGCCGG CCCGCTCCGC CCCGGCGTCG 
    ACGCCGTCGA GTCCGCCGTC AAGGGCGTCG TCGGCCCCGT CTACGGCCGC 
    TTCCATGGCG TCCCCCTCGA CGTCCTCGCC TTCGTCGACC GCAAGGTGGA 
    TGACACGGTG CAAGAGCTGG ACCGACACCT CCCGCCGACG CTGAAGGCCG 
    CCTCCGCCAA GGCTTGCGCG GTGGCCCGCG GCGTGCCGGA CGTGGCGAGG 
    GAGCTCACCG CGGAGGTGCA GCAGTCGGGC GTCACCGGCG CCGCGCGCGT 
    CGCGTACGCC AAGGTCGAGC CCGTGGCCAA GGGCGTGTAC GGCAGGATCC 
    AGCCGGCGGC CAAGGACCTC TACGTGCGCT ACGAGCCGGC GGCGGAGCAC 
    CTCGCCGTCT CCACCTGGCG CTCGCTCAAC AACCTGCCGC TGTTCCCGCA 
    GGTGGCGCAG ATCGCCGTGC CCACCGCCGC CTACTGGGCC GAGAAGTACA 
    ACAAGGTGAT CGCCGCCGCG GCCGACAAGG GTTACACCGG AGCACAGTAC 
    CTCCCCGCCA TCCCCACCGA GCGCATCGCC AAGGTTTTCG GCGAGTTATC 
    GCCGGAGGCC CAGCCGTCGA AGAGCGAGTC GGCGAAGACC CAGTAGGTGA 
    GGTCACCGCG CCTGAAGGTG AGAGGTAGCC TTCGCCTGAA GTCCTGAACT 
    GAATAAGTAA GAGTGGGGCG CTTATGGCAG CAGAAAAATG GTGTTTTAGA 
    TGTATGCATG TGACGACATT TTCGTGGATG ATGATGTTCT ACTTAGCTCT 
    TTTACTTTGT GTTGTGGCGT ACGTTTAATC CTCCTGGTTT TGTATAAAAG 
    CTGTGGTTGA TGTCGCAATC TTTTAGCTAA TCCAGTGCAA TTAGGCTTGA 
    ACTTCC

    Gene models with high sequence identity

    1. AT3G05500.1 [+] show detail - Rubber elongation factor protein (REF)
      E-value: 9e-61; Score: 231.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G05500.1

    Model type
    Protein coding
    Short Description
    Rubber elongation factor protein (REF)
    Computational Description
    Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 129 Blast hits to 129 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR