K37445

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37445

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37445

Determination of introduced cDNA(s)

  • J013071N20 - Rice Full-length cDNAs - Original: J013071N20

    full reading [+] show sequence

    Nucleotide sequence: J013071N20 - full reading
    GTTCCCCTTC TATCCACCCA CACCAGCAAG CCGCTCAGGC GCGCTCTCCG 
    CTCCACCGCC ATGGCGTCCA TCACCCTCCT CTCCCTCGCT CCCGCGGCCA
    CATTGCTCCA CCTCCCGGCC TCCACTTCGC TCTCCACCTC CTTCGTCGCC
    GCTCCAGGCC CCATCTCCGG CCGCCGGTCC GTCGTCCTCC GCGCCCGCCC
    GCGCCGCTGC GTCACGGTCG TGTGCAGCGC CGCGGCGGCC GAGGCCGCGG
    AGGCGGAGCC CGCGGAGAAG TTCCGGCTCG ACAACCTGGG CCCGCAGAAG
    GGGTCGCGGC GGCGCCCGAA GCGGAAGGGG CGCGGTATCG CGGCGGGGCA
    GGGCGCGAGC TGCGGGTTCG GCATGCGTGG ACAGAAGTCG CGCTCGGGGC
    CAGGCGTCCG GCGCGGGTTC GAGGGAGGGT AGATGCCGCT CTACCGCCGC
    ATCCCCAAGC TGCGCGGCAT TGCTGGAGGA ATGCATATTG GCTTGCCGAA
    GTATGTGCCG TTCAATTTGA GAGACTTGGC GCGTGGCGGG TTCAAGGATG
    GTGACGAGAT ATCATTGGAA TCCTTGAAAT CGAGGGGTTT GATTAATCCG
    TCTGGCAGGG AGAGAAAGCT TCCTCTGAAG ATTTTAGGAG ATGGTGATGT
    ATCAGTCAAG TTGAATATCA AGGCTGGGGC ATTCTCTGCT TCAGCCAAGG
    AGAAGCTCGA GGCAGCTGGT TGTACTTTAA GTCTGGTACC AAAGCGGAAG
    AAATGGCTAC CACAATCTTA TCTGAAGAAC CAAGCTCGTG CAGAAGAATA
    CTTTAGCAAG AAAAATGGTG GTGCTGGTGA ATCTGATGAA GCATCTGCAT
    AGAATTCATA TACACTGTAC TTCTCCTTTA CCCTTTTCTT TAACATATAC
    TTATTTCTCT TACCTTGTTC CAAAAGTTCC ACGTTCAACG AATTTTGAAT
    CCGTGCGATA TGCAAGC

    Gene models with high sequence identity

    1. AT3G25920.1 [+] show detail - ribosomal protein L15
      E-value: 4e-70; Score: 261.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L18e/L15 1.4e-12
    HMMPanther 50S RIBOSOMAL PROTEIN L15 1.1e-29
    HMMPanther Ribosomal protein L15, bacterial-type 1.1e-29
    HMMPanther 50S RIBOSOMAL PROTEIN L15 3.8e-69
    HMMPanther Ribosomal protein L15, bacterial-type 3.8e-69
    PatternScan Ribosomal protein L15, conserved site 0
    Gene3D no description 6.9e-07
    superfamily Ribosomal protein L18e/L15 3.3e-13

    See the detailed result >

    AT3G25920.1

    Model type
    Protein coding
    Short Description
    ribosomal protein L15
    Curator Summary
    encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex
    Computational Description
    ribosomal protein L15 (RPL15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid large ribosomal subunit, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, bacterial-type (InterPro:IPR005749), Ribosomal protein L15, conserved site (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G64670.1); Has 7744 Blast hits to 7744 proteins in 2658 species: Archae - 15; Bacteria - 5386; Metazoa - 72; Fungi - 86; Plants - 90; Viruses - 0; Other Eukaryotes - 2095 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR