K37512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37512

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37512

Determination of introduced cDNA(s)

  • J013049P14 - Rice Full-length cDNAs - Original: J013049P14

    full reading [+] show sequence

    Nucleotide sequence: J013049P14 - full reading 
    AGGACGACGG CGCGAGCGAC CCAAACCTAA ACCTCCCAAC CCCTCCTCCT 
    CCGCCGCCGA CGCCGCCGCA GCTGCCATGT CGAAGAAATC ACGCGGCGGG 
    GGCGGGGGCG CCGCCGCCGG CGAGGATCCC GAGGACCTCT CCCGCTCGCC 
    CCTCCAGGCC GTCCTCCTCG CCGACAGCTT CACGCTCAAG TTCCGCCCCA 
    TCACCCTCGA GCGCCCCAAG GTGCTGCTGC CGCTGGTGAA TGTCCCGATG 
    ATCGAGTACA CGCTCTCGTG GCTGGAATCG GCGGGGGTAG AGGAGTGCTT 
    CGTCTTCTGC TGCGCGCACG CACAGCAGGT CAAGGAGCAC CTGGGGAAGG 
    CGGGGTGGAC CGGGAAGCCT GCGGCGAGGG AGATGACCGT CACGGCTGTG 
    GAATCGCACG ACGCGATCAG CGCGGGCGAC GCGCTGCGCG TCATGTACGG 
    CCGTGGAGTT ATACATGGAG ATTTTGTTCT AATCAGTGGT GATACCATCA 
    GCAACATGAA TTTGAAAGAC GCTCTCCAGG AACATAAGGA TAGAAGGAAA 
    AAGGACCCAC TTGCTGTCAT GACTATGGTT ATAAAGCATT CAAAACCTTC 
    GATCCTAACG AACCAAACAC GGTTAGGTAA TGACGAAATT GTTATGGCGA 
    TAGATCCTGA GACTAAAGAA CTACTGTATT ACGAGGACAG GGCAGATGTC 
    TCAAACCTGT ATGTGACAAT TGATAAGGAC ATACTGGCCA GTAATCCTAC 
    TCTCCAATTG CATAATAACA TGGAGGACTG CTATATTGAT ATATGCTCAC 
    CAGAAGTTCT TAGTCTTTTT ACGGATAACT TTGATTACCA ACATCTTCGG 
    CGCCATTTCG TTAAGGGTTT ACTAGTTGAT GATATTATGG GGTATAAAAT 
    ATATACCCAT GAAATACGCT CAAGTTATGC TGCCAGAATA GATAATTTTA 
    GGAGCTATGA TACTGTGAGT AAGGATATAA TTCAAAGGTG GACTTACCCT 
    ATGGTGCCTG ATGTCCTGTC TTTCGGTGAT CGTCAAGAAA TCAAACTTCA 
    TCGGCAGGGA ATCTATAAGG CATCAGATGT AACACTGTCA CATTCTGCAC 
    AAATTGGTGC CAATTCTGTT GTTGGCAATG GGACAAGCGT TGGAGAAAAC 
    TGCAAGGTAT CCAATTCAGT TATAGGACAA GGCTGCAATA TTGGGAAAAA 
    TGTTTTGATT CATGGATCCT ATATATGGGA CAATGTCACA ATTGAAGATG 
    GATGCAAAGT GAGTAATTCA CTAGTCTGTG ATGGCGTTCA TTTAGGGGCA 
    GGGGCTATTG TTGAACCTGG CTGCATACTG TCATTTAAGG TTGAAGTTGG 
    AAAGAATGTT GTTGTTCCTG CCTATTCAAA AGTGGCATTG CTCCCTCAGC 
    CTTCAAATGA AGACAGTGAT GAGGAGCTTG AGTATGCTGA CACCAATTCT 
    GGAGTTACAG ATAGTCCACC CTTTTCCAGC ATGAGGAGTG CTGACCACCC 
    AACTGTATCT GATGATGATG ACTTAGAGGC ATCGGAGACT GGAACATGTG 
    GTGTCGTTGG TTACGTATGG GAAAATGTTG ATGCTGGAAT TCAGGAAGAA 
    TGGAGACAAT CAATTGCTCC AATTCCTAAA GATAAGCTTG AAGAGTTGCA 
    GCATGCTGCG TCTTTTGATG ACGATGATGA TGGATCAGAA GATGACTTTA 
    AAAATCGGCC AACTGTACTG GACCAAGATG ATGATTCTGA TGTTAGCGCG 
    GTTGAGGATG ATGATTATTC TAAGTTTGAG AAAGAGGTGG AAGAGACTTT 
    CCAAAGGGCG TTGGATGGTA TCCATCAAGA TAACTTGATA CTAGAAATTA 
    ATGCACTCAG GTTATCTTAT AGCCTTCAAC ATGCAGACTG TGCTGGAGCT 
    TTGTTCCATT CCGTTATGAG AAGTGCATTA GTGGCTGCAC AATCTACTAA 
    TGGTAACCTT CTAAAGACAA CTGCAGAAGC ACTTGGCAAA TGGAAGGACC 
    TACTGCGAAA TTACACCAAG TCAGTTGATG AGGAGATGGA AATATTATTG 
    AAGTTCGAGG AAATGTGCCA AGAAAATACA AAAGAATTTT CTCCACTATT 
    TTCAAAGATC TTGCCTTACC TCTATGATAA GGAGGTAGTA AGTGAAGACG 
    CAATTTTGAG ATGGGCGGAG GAGAAAGAAA ATGCCGATGA ATCTGATAAG 
    GTTTTCGTCA AACAATCTGA AGCTTTCATT CAGTGGCTTA AGGAAGCTGA 
    AGAGGAAGAT GAAGAAGAGG AGTAGAGCTG GAGCTTATGC TTGCATTCCT 
    TTGAGCTCTT GGAGAAATGC AGCATTTGCC TTGTTTGAAT GGTCTGCCGG 
    TGAGTTTGCA AGCGGCAAGT TTTGAAAACC TAATTGTTTG TACATTAATT 
    TAATGGCATT TTTGTTCCTA ACCAATCTGG TAAAAGAAAG GAGCAACATT 
    GCCCACGAGC CATGGGTTAA AACGACTGTA GAGTGTAGAT AAGTTAAAAC 
    CCTTTTTCCT ATGTTTGCTT CGCTGATGCT TCCATGAAGT TATTTTTTCC 
    TTCTGATGAA TTTGTTTAAC TGCCCATCTG TTTCTTTGC

    Gene models with high sequence identity

    1. AT2G34970.1 [+] show detail - Trimeric LpxA-like enzyme
      E-value: 0; Score: 786.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan eIF4-gamma/eIF5/eIF2-epsilon 31.754
    superfamily Armadillo-type fold 3e-40
    superfamily Nucleotide-diphospho-sugar transferases 6.8e-37
    superfamily Trimeric LpxA-like 4.8e-30
    HMMPanther EUKARIOTIC TRANSLATION INITIATION FACTOR 2B, 8.8e-171
    HMMPanther SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 8.8e-171
    HMMSmart eIF4-gamma/eIF5/eIF2-epsilon 1.3e-29
    HMMPfam eIF4-gamma/eIF5/eIF2-epsilon 1.1e-20
    HMMPfam Nucleotidyl transferase 0.00000000031
    Gene3D no description 4.3e-23
    Gene3D no description 0.0000000000058
    Gene3D eIF4-gamma/eIF5/eIF2-epsilon 8.6e-42

    See the detailed result >

    AT2G34970.1

    Model type
    Protein coding
    Short Description
    Trimeric LpxA-like enzyme
    Computational Description
    Trimeric LpxA-like enzyme; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT4G18300.1); Has 8121 Blast hits to 7961 proteins in 1548 species: Archae - 574; Bacteria - 3735; Metazoa - 1296; Fungi - 469; Plants - 387; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR