K37512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37512

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37512

Determination of introduced cDNA(s)

  • J013049P14 - Rice Full-length cDNAs - Original: J013049P14

    full reading [+] show sequence

    Nucleotide sequence: J013049P14 - full reading
    AGGACGACGG CGCGAGCGAC CCAAACCTAA ACCTCCCAAC CCCTCCTCCT 
    CCGCCGCCGA CGCCGCCGCA GCTGCCATGT CGAAGAAATC ACGCGGCGGG
    GGCGGGGGCG CCGCCGCCGG CGAGGATCCC GAGGACCTCT CCCGCTCGCC
    CCTCCAGGCC GTCCTCCTCG CCGACAGCTT CACGCTCAAG TTCCGCCCCA
    TCACCCTCGA GCGCCCCAAG GTGCTGCTGC CGCTGGTGAA TGTCCCGATG
    ATCGAGTACA CGCTCTCGTG GCTGGAATCG GCGGGGGTAG AGGAGTGCTT
    CGTCTTCTGC TGCGCGCACG CACAGCAGGT CAAGGAGCAC CTGGGGAAGG
    CGGGGTGGAC CGGGAAGCCT GCGGCGAGGG AGATGACCGT CACGGCTGTG
    GAATCGCACG ACGCGATCAG CGCGGGCGAC GCGCTGCGCG TCATGTACGG
    CCGTGGAGTT ATACATGGAG ATTTTGTTCT AATCAGTGGT GATACCATCA
    GCAACATGAA TTTGAAAGAC GCTCTCCAGG AACATAAGGA TAGAAGGAAA
    AAGGACCCAC TTGCTGTCAT GACTATGGTT ATAAAGCATT CAAAACCTTC
    GATCCTAACG AACCAAACAC GGTTAGGTAA TGACGAAATT GTTATGGCGA
    TAGATCCTGA GACTAAAGAA CTACTGTATT ACGAGGACAG GGCAGATGTC
    TCAAACCTGT ATGTGACAAT TGATAAGGAC ATACTGGCCA GTAATCCTAC
    TCTCCAATTG CATAATAACA TGGAGGACTG CTATATTGAT ATATGCTCAC
    CAGAAGTTCT TAGTCTTTTT ACGGATAACT TTGATTACCA ACATCTTCGG
    CGCCATTTCG TTAAGGGTTT ACTAGTTGAT GATATTATGG GGTATAAAAT
    ATATACCCAT GAAATACGCT CAAGTTATGC TGCCAGAATA GATAATTTTA
    GGAGCTATGA TACTGTGAGT AAGGATATAA TTCAAAGGTG GACTTACCCT
    ATGGTGCCTG ATGTCCTGTC TTTCGGTGAT CGTCAAGAAA TCAAACTTCA
    TCGGCAGGGA ATCTATAAGG CATCAGATGT AACACTGTCA CATTCTGCAC
    AAATTGGTGC CAATTCTGTT GTTGGCAATG GGACAAGCGT TGGAGAAAAC
    TGCAAGGTAT CCAATTCAGT TATAGGACAA GGCTGCAATA TTGGGAAAAA
    TGTTTTGATT CATGGATCCT ATATATGGGA CAATGTCACA ATTGAAGATG
    GATGCAAAGT GAGTAATTCA CTAGTCTGTG ATGGCGTTCA TTTAGGGGCA
    GGGGCTATTG TTGAACCTGG CTGCATACTG TCATTTAAGG TTGAAGTTGG
    AAAGAATGTT GTTGTTCCTG CCTATTCAAA AGTGGCATTG CTCCCTCAGC
    CTTCAAATGA AGACAGTGAT GAGGAGCTTG AGTATGCTGA CACCAATTCT
    GGAGTTACAG ATAGTCCACC CTTTTCCAGC ATGAGGAGTG CTGACCACCC
    AACTGTATCT GATGATGATG ACTTAGAGGC ATCGGAGACT GGAACATGTG
    GTGTCGTTGG TTACGTATGG GAAAATGTTG ATGCTGGAAT TCAGGAAGAA
    TGGAGACAAT CAATTGCTCC AATTCCTAAA GATAAGCTTG AAGAGTTGCA
    GCATGCTGCG TCTTTTGATG ACGATGATGA TGGATCAGAA GATGACTTTA
    AAAATCGGCC AACTGTACTG GACCAAGATG ATGATTCTGA TGTTAGCGCG
    GTTGAGGATG ATGATTATTC TAAGTTTGAG AAAGAGGTGG AAGAGACTTT
    CCAAAGGGCG TTGGATGGTA TCCATCAAGA TAACTTGATA CTAGAAATTA
    ATGCACTCAG GTTATCTTAT AGCCTTCAAC ATGCAGACTG TGCTGGAGCT
    TTGTTCCATT CCGTTATGAG AAGTGCATTA GTGGCTGCAC AATCTACTAA
    TGGTAACCTT CTAAAGACAA CTGCAGAAGC ACTTGGCAAA TGGAAGGACC
    TACTGCGAAA TTACACCAAG TCAGTTGATG AGGAGATGGA AATATTATTG
    AAGTTCGAGG AAATGTGCCA AGAAAATACA AAAGAATTTT CTCCACTATT
    TTCAAAGATC TTGCCTTACC TCTATGATAA GGAGGTAGTA AGTGAAGACG
    CAATTTTGAG ATGGGCGGAG GAGAAAGAAA ATGCCGATGA ATCTGATAAG
    GTTTTCGTCA AACAATCTGA AGCTTTCATT CAGTGGCTTA AGGAAGCTGA
    AGAGGAAGAT GAAGAAGAGG AGTAGAGCTG GAGCTTATGC TTGCATTCCT
    TTGAGCTCTT GGAGAAATGC AGCATTTGCC TTGTTTGAAT GGTCTGCCGG
    TGAGTTTGCA AGCGGCAAGT TTTGAAAACC TAATTGTTTG TACATTAATT
    TAATGGCATT TTTGTTCCTA ACCAATCTGG TAAAAGAAAG GAGCAACATT
    GCCCACGAGC CATGGGTTAA AACGACTGTA GAGTGTAGAT AAGTTAAAAC
    CCTTTTTCCT ATGTTTGCTT CGCTGATGCT TCCATGAAGT TATTTTTTCC
    TTCTGATGAA TTTGTTTAAC TGCCCATCTG TTTCTTTGC

    Gene models with high sequence identity

    1. AT2G34970.1 [+] show detail - Trimeric LpxA-like enzyme
      E-value: 0; Score: 786.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan eIF4-gamma/eIF5/eIF2-epsilon 31.754
    superfamily Armadillo-type fold 3e-40
    superfamily Nucleotide-diphospho-sugar transferases 6.8e-37
    superfamily Trimeric LpxA-like 4.8e-30
    HMMPanther EUKARIOTIC TRANSLATION INITIATION FACTOR 2B, 8.8e-171
    HMMPanther SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 8.8e-171
    HMMSmart eIF4-gamma/eIF5/eIF2-epsilon 1.3e-29
    HMMPfam eIF4-gamma/eIF5/eIF2-epsilon 1.1e-20
    HMMPfam Nucleotidyl transferase 3.1e-10
    Gene3D no description 4.3e-23
    Gene3D no description 5.8e-12
    Gene3D eIF4-gamma/eIF5/eIF2-epsilon 8.6e-42

    See the detailed result >

    AT2G34970.1

    Model type
    Protein coding
    Short Description
    Trimeric LpxA-like enzyme
    Computational Description
    Trimeric LpxA-like enzyme; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT4G18300.1); Has 8121 Blast hits to 7961 proteins in 1548 species: Archae - 574; Bacteria - 3735; Metazoa - 1296; Fungi - 469; Plants - 387; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR