K37522

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37522

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37522

Determination of introduced cDNA(s)

  • J023019N18 - Rice Full-length cDNAs - Original: J023019N18

    full reading [+] show sequence

    Nucleotide sequence: J023019N18 - full reading 
    GCCCGGTTTC GTCTTCCTCT GATCCTCTCG CCGCCGCTGC TCCCCCAACC 
    GAATCCGACG ACCTCGCCGC CGGGCACGCC CGCCGCACGC GACCTCCTCT 
    TCCTCCGCCG GAAGCCACCG GACCTCCTCG CCGACGGATT GCACCCGGCA 
    ATGACGATGG TGGAGGCCGA GGCCGGCAAG GAGGCGATCC GGCGAGCCCT 
    GCGGTCTCTG CGGCGGAGGC ATCTCGTCGA GGAGGGCGCC CACCGCCCGG 
    CCATCGAGGC GCTCGCCCGG CCCTTCGCCG CCCAAGCGGT GGAGTGGAAA 
    GAGAAGGCTG AGAAGCATGA ATTGGAGCTG CAGCAATGCT ACAAGGCTCA 
    GTCACGTTTT GTCCGAGCAG CTCGTTACCG AGATAGAAGA GGGGAAAGCA 
    TCAAAAGCGC TGCTTAAAGA GAAAGAAACA CTGATTACTA CCATGCAGAC 
    TGAACTCGAG CAAACCAGGG AAGAAAATAC GCAGCTCAAG CAGTCGCTTG 
    AAGAAAAAAC AAGCGCTTTA GATCTTATAA TTCAGGAGCA CCAGGCAGTT 
    AAAGCTGAAC TTGAACAGGC ATTAACAAAA CAGAAAGTGG CAGAAGATGA 
    AAACAGGAAT CTGATTGATC GATGGATGCT TGAGAAGATG AAGGATGCAG 
    AGAGGCTTAA TGAGGCAAAT GCAATGTATG AGGAGATGGT TCTAAAGCTG 
    AAGTCAGCTG GTGTTGGTGG TATACAACAC AATGCACTAC AAGAAGCTGA 
    TGGCATCATT CGTCGTTCTG AAGCTGGGTA CATGGACATC ATGGAAACAC 
    CAATCCCATC TACATGCAGA ATCACTATCC GTGCTCATGA TGGTGGCTGT 
    GGATCTATAA TTTTCAGCAT AACACAGACA AGCTAATCAG TGGTGGCCAG 
    GATCAAACTG TCAAGATTTG GTCTGCACAT ACCGGTGCTT TAACCTCCAC 
    TCTACAAGGC TGTTTGGGGT CTGTCAATGA TCTTGCTGTG ACTAATGACA 
    ACAAGTTTGT GATTGCTGCC TGTAGCTCTA ACAAATTGTT TGTATGGGAA 
    GTTAATGGGG GGCGCCCACG TCACACTCTG ACTGGTCACA CAAAAAATGT 
    TTCATCCGTT GATGCAAGCT GGGTGAAGAG CTGTGTTCTT GCTAGTTCAT 
    CCAATGATCA TACCATCAAG ATTTGGGATC TTCAGTCAGG CTTCTGCAAA 
    AGCACCATAA TGTCAGGGAG CAACGCCAAC TCACTAGCTT TCATTGATGG 
    TGTCACCCTT TGCTCGGGTC ATAGGGATGG ACACCTTCGG TTATGGGACA 
    TCCGAAGTGC AAAATGCACT AGTCAGACAT TCGCTCATCT TGACGTAAGC 
    TCTGTCAGTG TGTCACGGAA TAGAAATTTC ATTCTTACAA GTGGAAAGGA 
    TAACGTGCAC AACCTTTTTG ATCCTAGAAC AATGGAAGTT TGTGGAAAAT 
    TCAAGGCCAT GGGTAACAGA GTGGTTAGCA GCTGGGGCAG GCCTTGCATA 
    AGCCCTGATG AAAACTCCAT AGCTGCTGGT GCTAATGATG GGTCTGTTTA 
    CATATGGTCA AGATTGAAAA AGGATGGGGT ACCGACGATC CTACAGGGCC 
    ATTCTTCGTC GGTAGTTTCA AGTTCATGGT GTGGGTTAGG ACCTCTTGCT 
    ACCGCTGACA AGCATCATAT CTATATCTGG ACTTGAGATC TTTGGTTCCT 
    TTGGTCATTG AATCCAGGTT TTTGAGAGTT TTGTTCCAAT GTATTGATGT 
    CTACCTCGCT TTCCTCTCAA AGATGCTAGT TTACATGTAA ATAGCTTAGT 
    TTATAAGCAT TGTGAATAAC TTAATCCGCA AATTGACAGT AAACCTCATT 
    GGCTTACTTT TCTCTGACAT CTGTTAATGG TTGGTCAATG CTCAGCTGGG 
    CTGGGCTTTT AAAGCAGCAA ATTTTCTCTA GGTTTTAGTA TGTGCAATTG 
    CTGATCCATA TGGCTATTTT TTGGATGAAA AATGGATAAT CATTCATCAC 
    AGCTTCAACC

    Gene models with high sequence identity

    1. AT5G50230.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 1e-134; Score: 71.20

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    superfamily WD40 repeat-like-containing domain 8.4e-53
    FPrintScan G-protein beta WD-40 repeat, region 0.000000019
    FPrintScan G-protein beta WD-40 repeat, region 0.000000019
    FPrintScan G-protein beta WD-40 repeat, region 0.000000019
    ProfileScan WD40 repeat 2 9.74
    ProfileScan WD40 repeat 2 12.413
    ProfileScan WD40 repeat 2 9.272
    ProfileScan WD40 repeat 2 8.537
    ProfileScan WD40-repeat-containing domain 30.136
    Gene3D WD40/YVTN repeat-like-containing domain 4.4e-50
    HMMSmart WD40 repeat 0.011
    HMMSmart WD40 repeat 0.00000046
    HMMSmart WD40 repeat 0.56
    HMMSmart WD40 repeat 1.2
    HMMSmart WD40 repeat 16
    HMMSmart WD40 repeat 15
    HMMPanther AUTOPHAGY PROTEIN 16-LIKE 2.7e-55
    HMMPanther AUTOPHAGY PROTEIN 16-LIKE 0.000000000000014
    HMMPfam WD40 repeat, subgroup 0.026
    HMMPfam WD40 repeat, subgroup 0.072
    HMMPfam WD40 repeat, subgroup 0.000000027
    HMMPfam WD40 repeat, subgroup 0.034
    HMMPfam WD40 repeat, subgroup 0.046
    HMMPfam WD40 repeat, subgroup 0.039
    HMMPfam Autophagy-related protein 16 0.00000000049

    See the detailed result >

    AT5G50230.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Autophagy-related protein 16 (InterPro:IPR013923), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 76401 Blast hits to 35303 proteins in 1111 species: Archae - 133; Bacteria - 9405; Metazoa - 31134; Fungi - 15838; Plants - 8951; Viruses - 22; Other Eukaryotes - 10918 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR