K37531

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37531

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37531

Determination of introduced cDNA(s)

  • J033037B09 - Rice Full-length cDNAs - Original: J033037B09

    full reading [+] show sequence

    Nucleotide sequence: J033037B09 - full reading 
    GTGTGCCAAA ACCGCCCACC TCCTCTCGCC CCTTCTCGCC GCCTCCGCCG 
    CCGCCGCCGC CGACGAGGAG GAGGCCGATG GGCTCCGAGG AGGAGCCGTC 
    GCAGATGCGG AGGGCGCTGG TGGACGCGCT CGCGGGGGCC ATCTCCGGCG 
    GCATCTCCCG CACCGTCACC TCCCCCCTCG ACGTCATCAA AATCCGCTTC 
    CAGGTTCAAT TGGAGCCCAC AACCTCGTGG GGTGTACTTC GAAGGGATGT 
    CTATGGACCT TCCAAGTACT CTGGGCTTTT GCAAGCAAGT AAAGATATTC 
    TCCGAGAGGA AGGTTTGCCG GGATTTTGGA GAGGAAATGT TCCAGCCCTA 
    TTAATGTATA TGCCATATAC AGCTATACAA TTCACTGTTC TACACAAGCT 
    GAAAACATTT GCTTCTGGTT CATCCAAAAC AGAGGATCAT TTGCACTTGA 
    GTCCTTACCT ATCGTATGTA AGTGGGGCTA TAGCAGGATG TGCAGCAACA 
    GTAGGATCAT ATCCATTTGA CCTTCTCAGA ACAATTCTTG CATCACAGGG 
    TGAACCGAAG GTTTACCCTG ACATGAGGTC TGCATTTCTT GATATAATGA 
    AAACCCGCGG TTTCCGAGGA CTTTACGCCG GTCTAACTCC AACTCTTGTT 
    GAAATCATAC CATATGCTGG CTTACAGTTT GGTTCATATG ATACTTTCAA 
    ACGGTCGATG ATGACATGGA ATAGGTACCG ATATTCACAT CTTAACTCAG 
    GAAGTGAGGA TGATTCAGTA TCAAGCTTCC AGTTATTTCT TTGTGGATTT 
    GCAGCCGGAA CATTTTCAAA AGCTGCTTGT CACCCACTTG ATGTTGTAAA 
    GAAAAGATTT CAGATTGAAG GATTAAAACG ACATCCAAGA TATGGCGCCC 
    GAATTGAGAG CAGCACATAC AAGGGCATGT ACCATGCCCT AAAAGAGATT 
    GTTGCGAAGG AGGGGTTTGG AGGCCTTTAT AAAGGACTTT TCCCATCTTT 
    GGTGAAATCG GCTCCTGCTG GTGCCGTGAC ATTTGTGGCA TATGAATACA 
    TCTCAGACTG GATAGGGAGC AAAGCTGGAG TCGAGTGAGT TCTTGGATGA 
    AGGAGCCATT GAGAGATACA ACATACAATG ATGAGAGAAC AGTGTCCACT 
    CTTAATTGTT TTGTGACCGC AAGGTCGAAA GTTAAAAAGT GCATACAATC 
    CCTTGAGAGC TGATACTTGG AAAGCCTTGC ATAGAATTAG CTACTCTTGT 
    CATTTCTCTG CCTTTTTGCC CCATTGACCT GTGTTGTTGC ATTCGTTGAG 
    ATGTAACAGT GAGGATGAGT AAAACTAAGG AAAGTGTAGA GCTTGTGACG 
    CTTGATGAAG GCCGGGGAGC GGCAGGCATT TTTGTTAAGA TGATATTATC 
    TCACTCCTAT ATGTCCCTCA CTCACATAAT GCAGTTAATG TGAACTGTTA 
    CATGATTCGT AGCG

    Gene models with high sequence identity

    1. AT5G48970.1 [+] show detail - Mitochondrial substrate carrier family protein
      E-value: 2e-143; Score: 506.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Mitochondrial carrier protein 3e-22
    FPrintScan Mitochondrial carrier protein 3e-22
    FPrintScan Mitochondrial carrier protein 3e-22
    FPrintScan Mitochondrial carrier protein 3e-22
    FPrintScan Mitochondrial carrier protein 3e-22
    FPrintScan Mitochondrial carrier protein 3e-22
    ProfileScan Mitochondrial substrate/solute carrier 28.477
    ProfileScan Mitochondrial substrate/solute carrier 22.835
    ProfileScan Mitochondrial substrate/solute carrier 25.066
    HMMPanther MITOCHONDRIAL CARRIER PROTEIN-RELATED 2.1e-112
    HMMPanther Mitochondrial substrate carrier 2.1e-112
    HMMPfam Mitochondrial substrate/solute carrier 6.7e-24
    HMMPfam Mitochondrial substrate/solute carrier 2.1e-21
    HMMPfam Mitochondrial substrate/solute carrier 1.3e-24
    superfamily Mitochondrial substrate carrier 2e-85

    See the detailed result >

    AT5G48970.1

    Model type
    Protein coding
    Short Description
    Mitochondrial substrate carrier family protein
    Computational Description
    Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT3G21390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR