K37546

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37546

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37546

Determination of introduced cDNA(s)

  • J023078M01 - Rice Full-length cDNAs - Original: J023078M01

    full reading [+] show sequence

    Nucleotide sequence: J023078M01 - full reading
    TTGGCAGCAG CAAGGGCAAC AGAGGAGCCG TGGAGGTGGC AGGCGCTGCC 
    GGCCGCGAAG AGAGGAAGCA ACAATGGCCT CTCCGCCTCC GCCGTTAGGG
    TCAGAGACGG CGATCTCCCC GGCGTACGGC GAGGAGGAGG AGGAGGAGGA
    GGAGGAGCAG TGCCGCATCT GCCGCGTCCC TGCGGAGGCG GGGCGCCCCC
    TGCGGCACCC CTGCGCCTGC CGTGGGTCCA TCCGCTTCGT CCACGACGAC
    TGCCTCCTCC GATGGCTCGC CACCCGCCGC ACCTCCCACT GCGAGGTTTG
    CAAGCGCCTC ATCTCCACCT GCCCTCTCTA CGCCGCGAAT GCTCCTGCAA
    GGCTCCCCTT GTCCGAGTTC ATGCTCGGCC TCGCCAACAA GCTCATGGGC
    TGGTTCTTCC TCCTCCTCTC CCTCCTCGCC GCCATGTACA TCTGGGAATT
    CGTCATGCCC TTCACCACCC TCTGGATATG GCGCCTCGCT CTTGCTAGGA
    GCTTTGCTCG GGTGCGCCAC CTGCTCTCCC TCCGGATCTT CGCTCATGCT
    CATGGACATG GCGCCCCCCT CTATGGCCTT ATGCCTTCTC CCGACGCCGT
    CTTCGCCTGT GTTTCTATCA GAAGAGCCTT TCTCCGGGAC CTCCCCCACT
    TCAGGGACCT CAATCCCATT GCCAGATTTG CTGCCCATGC TCTTGCTCCC
    TTTGCACTCT GGATTGCTCG CCTGGAAACT CGTCTCGACC GAAGGTTTGG
    AGGCTTGGAT AGTTTGCAAG TCATTGCGCT ACATACCGTT GAAGCTTCCT
    TGATGGTGGT ACTTCTTGAT GTGATGCTTG CTTGTGTTTT TGGTTTTATC
    CCCTTCTCAC TGGGGCGGAT AATCCTATTC TGCACATCGT GCTTCAGTTT
    TGGAAATATG GATAGAGTCC ACTCCTACAC TTCAACATCT TCTATCCTTT
    TAGTTGGATA TAGATTTATC TTTTCACTGG GTGTACTTTT CACTGGGTTT
    CATACTTTCG ACCAGTACTC GAGGGGAGAA CACCTCACAA TTGCAGTTTT
    CTTCAAGGTC TTGACCAATG GAATGTACAG ACTATTCAGC CCTCTTAGAA
    GGTTGCCTGG TATACATGTA ATGGTCCAGA TGGCATTGTC TTTCTTGCGA
    CTGTTCTTCA GAGGGATCAT AAATCTAGTC ACCGTTGCCA ATATTTCAGT
    TAATCTCATT AATGTGATTG CAATATGGCC GTTGTTCTTT GGCTGGTCAG
    TTGATATCTG TGCTTCACAA TTGTTTGGTG AAACAATATA TCAGAAGCTT
    GAACTTCTAT TTGCCTCATC TTTTGCTTCT ACTGCTCTTC ATTGGCTCAT
    TGGATGCATC TATTTGATGT TACTCTCAAT ATTTTCCAGT CCTCTTTGTC
    TGGTATTGGG TCCAGGAGTT ACTATTCCCT TTGTCCACTT TTCTGGAGAA
    GAAAGCTTGA TACAGCTCTT CCGCGAACCA TTCTACAAAT TTTCTTTAAA
    GCTGCTACCT GGTCTTTTTG TCAGTGCTGT AGATGTTGCT ATGGTCATTC
    TTGTTCCTGT TCAAATTGCT GGCCAATTGG CACCTAAGGT GTTCCCATTA
    GATATAACCT ACTTTGATCC TCCTACTAAG GGATCAGCAT TTTGGCAAGC
    ACCACGGAAC TATGCAGAGT TACTTTCTGG TGCCCTTCTT CTGAGGTTTC
    TCATCTGCAA TACACTCAAA TACCTTCAGC CTGGTCCACT ATTGCAGAAG
    TTACTGCTGT ATTGGTCTGC CACCACTAGA CGTGTTCTTG GTCTGCTTGA
    TTTATTGATT GCCTGGTCTG CTGGAGATGG TGAATGCGAG GATGGAAATG
    GTTCCACACG AAAATTCCAC CATGGTAGCA CTTCTGAAGA TGAGTACAAA
    AGGTAACACT ACTGGCACCA CCATGACACT CAATGCTCTC TCTCTCTCCT
    ACTCTCTTCC TCTCTCCAAA TTTGTGGCTT GATATAGGTT AGTGCCTGTA
    TGCTTGCTCA TTCAGGAATT TTCCATTTAG CCTGATTGCA TTCACTTCCA
    TTTCAATCAG ATTCGCCTAT TCGCGTACAC CCTCCATTTT CATTAAGTGC
    ACATAACTAG GCAATGGTTC TTTTGTGGGA GTGAACAAAA GTATCCTCCA
    ATATATGTCG AGCACGTAAA ATGTGGTAAA GTTTATCTAG GAGTTGTAAG
    CATGCTAAGT ATTTAGAAAC AATATTTCAG TCAAGACTCA ATAGTGCAAG
    TATTTAGAAA CATAGGGAGT ATAATACTCA CAGTGTGCGT ATATACTCAA
    CCCTAAAATA ATTGTATGAT AGTTTTATAA TGTATATCCT AAATCCATTT
    GCATTTTAAA TCAACATCGA TGGTGGCATA TTTAAGTTAC ATTGTTCTAG
    CTGCAGTATC TAATTTAAAC TAAGACCTTT CCAAGGATCC AAATTGAAAA
    TATCTATGAT GCGATTTATC TGCATATTAT GCATTCACCT ATTTCGTGAA
    ATATTGCAAG CATCATTGCC AGTTCTTTTA GATTTCCTGG TCAGAATCTT
    ACTCATTCTG CACTATTCCA TGACAAACAG GGAGACATGG ACTTTAACTG
    AAGTTAAGCA ATATAAGCAT GGTCGGGATA TTTTTTGTTA CTTTCTGCAG
    TTGGTTTCTT ATTGTTCACT GTGTGCTTAG AGGTACACTG CACATAACTA
    GGTTTCACGA TATCAATAAG TACAGTTTTT AGAGGTACCA AGTAGGCAGG
    GGTGAAGACA GGGAGAGGCG GAGGGAGTCC TGGCCTCTCC CAATGATGCA
    TTATCTGTTT ATGACCTGCT AATTATCTCT CTAATTACGT GATTAGTTGA
    AGCACTTTGG TGTAGGCATT CAAGCTTTCA ACACTAACTG TGTTTGCATG
    CCTAAACAAA CTAGGAGATA TACGCCTTTT TCCATGATAA TTAGTTGATT
    ACTGCATCCT GCACTTTGGG TAGATGGTTT TTGCATGCTC CTACACCAAG
    CTAATACATG GAAATGCAAT GGCATTAATT TAAACGGCTT GGCTGTTCTA
    ATGCCCTCAT ATCGTTGTTA ACTGCTAATA TCTATTTCTA CATTAGCCTC
    AATTCATTTA CCTCTTCACT TTAATTTAGA ATACTAAAAT ATTTAAAAAT
    AATATATGCA GCCAATTATA AATAATAGTC ACGGAAATAT TCTTTTGCTA
    TCCACATAAA ATACTTTTAT TTTACATGTA TTGTGATGCA ATTTTTTATG
    GTTCGATCAT TTTCACTCAA TATATAGCTC AAATTGACCC CCCCCTCAAG
    AGCAAATCCT GGCTTCGCCA CTGCACGAAG GGTATCTTAG TTATATTCAT
    CTTTTTGTTC TATGGGTGAA AAAAATATGC CCTATAAAAG TGAATCGAGG
    TACAGATTTA ATAAAGAGAA AGGAATCTAT GATTGGAATG TTAAAAGGAG
    ATATGGTGCT TTTATTTTTC TCAAGAGGCC ATGCTACATC TTACACTCTC
    TTATCGAGCA TACATTATAT GTGCTTCTCT TTCTTCTTGC GAACATAATA
    AGCTTCTTAT TTTTTTCGAT AGCTCGCTCT TGACAGTTCA TCTTACTATG
    TTGCTGGTAA GGCTTAGATT TCTAATATGA TTTGTTTATT TCTATTTTGA
    ATTTCTTTCT TGAAAAATTA ATTATACCCT GTTTCCTTAG TATTCTTGCA
    GCCTGGTGGG TGGTGGGTAG TCAGTAGTGT TGGCATGTGT TCCATTTGCT
    CCATTTTGCC TTTAAAGGGA TAATCCATCT CAGTACCTCT CGCCAAAGTA
    TGCGTCTCAT CATAGGACGT TTATACTTTT TTTGTTCTAT GTAGTGTGTA
    TTTATTCAGC GGTAACATTT TGACAGTCTG ACCATTCTTT TGGTTGAATT
    GACAGTCTGA TCCTTCATTA CTAAAGATAA TCATTTGCAG TTTTCAGTTG
    GCATGCAGAT CAAATAGATA TCAAAGAAAG AGTAAATTGC ACTGTTGGCC
    TCTAATTCTC TATGCTTGCA TAAGTCCCAG AGCTATTGAT CGCTAAACCT
    GCACAGGTCC CAGAAGTAGA AAGTTGCATA TCTTATCCTT GAACTCGTAA
    AACTGAATTA ACTAATATTA AAATAAGGTT TTGCTGTCTG ACTTGTTAGC
    TTGCTATTCT CGGCTGCCTG GCTACTATTT TACCATTCAA ATAATAGTTC
    TCTTTTTTCG TTGGCAAACC AAGAGAGCTT GACCGAAAAC ATAAATGTTA
    CTTTTTTTGC ACTCTGTACC AGGAGATTTG CTGCGGTTCG CCTGATTCTA
    CTTGTAGTGC TCTCATCGTC AACTCTTGTG ATATTCAATT CTGCTGTGCT
    TATTGTCCCA GTCTCTATTG GCCGTGCATT GTTGTTTGTC ATCCCTAAGT
    TGCCAATAGC AGGTGGATTG AAGTACAATG ATCTGTTTGC TTTTGCCATT
    GGATTTTGCA TCATATCAAC TATCATTGCC GCCTCTCGAG ATTTATTTGT
    CTACATGGCT TCTGGGAGAA CACACCTTCT GGCTTCCGTT ATCTACAAGT
    GGGGTATAAC TGCTTTGAAG GGTTCTCCAC TGCTGTTCAT ATGGATTGTC
    ATAATCCCCC TTCTGATTGG TCTGCTGGTT AATTTTCTAC TTATATCACC
    CTTCCTCGTG ACTGCCAATG GCATGTTCGT TATCGACCTC TTCTGTACTT
    GGTTCCTAGG GCTGCTACTG CTGAAGTTCT GGGTGAAGTT GGTTCATTGG
    ACAACGGTCA CACCTTTCCT GGTGTATTTC ATTGATGAAA GGTGGGACTG
    GAAGCTTACT CGGGCAAGAG AGGACGGGTT TTCGGGGCTG AGGGCATTGT
    GGGTCTTACA AGATGTATTG ATGCCTATCA CCTTGAAGCT TCTGACTGCT
    CTCTGTGTCC CATATGCGCT TGCGAAGGGT GTCTTCCCAA ACTTTGGCTA
    CCCTGATGCT GTGAACTTAA CAGTATACCG TTTTGCATGG TTAGGCGGCT
    TTGCCTTGTG TGTGCTGTAT GATCTAGCCA AGGTATTCTG CAAGGTCCTG
    GTTAAACTCC ATGATTCTAT CAGGGACGAG CGCTATCTTA TTGGGCAGAG
    GTTGCAAAAC TACGTTGACA ATAGCTGAAG ACCGTTTGTT TCTTTTTGAG
    GCAACAGAAC ACCGTTTCTC GTAGTAGTTA ATACACCGTT TAAACGATCG
    AGGATATATA GCTAATTGCC TGCAGTTCAT ATAGGATATA TATATATATA
    TGTTTAGTGA CTGATATTAA CAGTAGTTGA AAATGATGGA AATATCTTGG
    TGGTATTACC ATCAACAAGA ACACGCTGAG ATCCCAGAAA GATTTTCCGC
    TGACGGAAAT TGTAAATATG GATGCAATCT TCTATGAGAA TTTGCATTTT
    TATTTCTTTC

    Gene models with high sequence identity

    1. AT4G34100.2 [+] show detail - RING/U-box superfamily protein
      E-value: 7e-44; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 1,8 0.0000000000000021
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 0.0000000000000021
    HMMPanther SSM4 PROTEIN 9.7e-20
    Gene3D no description 0.00000000000083
    ProfileScan Zinc finger, RING-CH-type 20.974
    HMMSmart Zinc finger, RING-CH-type 1e-20
    HMMPfam Zinc finger, C3HC4 RING-type 0.000000026

    See the detailed result >

    AT4G34100.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G32670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR