K37601

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37601

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37601

Determination of introduced cDNA(s)

  • J023064A16 - Rice Full-length cDNAs - Original: J023064A16

    full reading [+] show sequence

    Nucleotide sequence: J023064A16 - full reading 
    GGCCGCCTCA CCCTCCTCGG ATACTCCTCC GCTCGCTTTG CGCCATCGCC 
    GCCACCGACG CCTTCCTCCC TAAGCCCTCT CCCTCCTCCT CCGCCCCATT 
    CCTCCTCCTC CTCTCCCCGT CCACGCCGCG CCTCCACATC CGCTCCACCC 
    GCCGCCTCTC ACTCGCGCAG CTCGCTGCAT CCGACTCCTT CCAATCCTCT 
    TCATCCTCCG CCGCCGCGCT TGACTTCGCT GAGCCCGGCG CCGCCGACGA 
    GTCCGATGTG CCGGAGGAGT CTGACCAGGA GGAGGGGTAC GCGCCGGAGG 
    CCGAGGAGGC GGCGGATGAG ATGATGATGA GGAGGAGGAA GCCGTCGAGG 
    CCTCCGCGGA AGTTGCGGAG GAGCCTAAGG ACGTAGAGGA GGTCAGCGAG 
    TACGTGGAGC CGCCTGCGGA GGCCAAGGTA TACGTCGGGA ACCTACCCTA 
    CAACATCGAC AGCGAGCGCC TCGCCCAACT CTTCGAACAG GAAGGCGTCG 
    TCGAGGTCTC CGAGGTCAAT CAGTGACTAA ATGGACGCAG TTTTATATTG 
    ACCCCTCATC ATCCCAGAAA TAGCATACAA TCTAGGTGAT ATTGTTGGCT 
    TGGATAAGTT AATTAAGTTT GTCAGTATTT AAATAGCTAA ATGGTTCATC 
    CCTCTGTCTG AACAAATTTA TAAATTCTAT GGTTCTTTTT TTTCCTTGCC 
    AAGTAATGCA AATCAACAAT GACTTCAATG CCTTATCTTT TT

    Gene models with high sequence identity

    1. AT5G50250.1 [+] show detail - chloroplast RNA-binding protein 31B
      E-value: 1e-09; Score: 60.10

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR10432:SF56 3.50000235434317e-10
    HMMPanther PTHR10432 3.50000235434317e-10
    HMMPfam RNA recognition motif, RNP-1 0.0067

    See the detailed result >

    AT5G50250.1

    Model type
    Protein coding
    Short Description
    chloroplast RNA-binding protein 31B
    Curator Summary
    Encodes a RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Supports editing of specific CP31A-dependent sites.
    Computational Description
    chloroplast RNA-binding protein 31B (CP31B); FUNCTIONS IN: RNA binding, poly(U) RNA binding; INVOLVED IN: RNA modification, innate immune response; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: 31-kDa RNA binding protein (TAIR:AT4G24770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR