K37605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37605

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37605

Determination of introduced cDNA(s)

  • J023087B12 - Rice Full-length cDNAs - Original: J023087B12

    full reading [+] show sequence

    Nucleotide sequence: J023087B12 - full reading 
    GGCCCTATCG CCGGCGGCGC AGTTCCGGCA AAGCTCGGCC GCGTGCTCCG 
    GCGACCCAAG GAGGCCACGG AATACTGAGA GGATCAGAGG AGGTGAGGAC 
    CCTGGACCGT CGGAGGGCGG AAGTGGAGAA TCTTAGGAGG ATAATCCTCG 
    CAGATACTGA GGGGCAGCCA TGGAGGAGGA GGTGGAATTG CCTCTCCCCA 
    CGGAGAAGCT CGCCGTGGAT CCGGGCAGGG AGGGAGGAGA GCAAGGTGTG 
    GCTGTGCTCG TGGCCACCGG GAGCTTCAAT CCTCCCACCT ACATGCATCT 
    CCGAATAACT GGCAAAGGAT GAGTTGCAGC AGCGAGGGTA TTGTGTATTG 
    GGTGGTTACA TGTCTCCAGT GAACGACGCT TACAAGAAGG AGGTGATATA 
    TGGGATTGGG AAATTTTATG AAATGGGAAA GTATATCACC ACTGTTCTCT 
    TGACTGAGTT TAAAATTTGG AACGGATTAG GGTCTCTTAT CTGCAGCCCA 
    CCGAATTCGC TTGTGCGAAC TAGCATGTGA AAGCTCATCT TTTGTGATGG 
    GTGATCGATG GGAGGCAATG CAGAAAGGTT ACCAACGCAC CTTGACTGTT 
    CTTTCAAGAA TTCGGAACGC TTTGTGCAAG GATGGTTTAG CTGATGGAGG 
    TAGTCTCAAG GTAATGCTTT TATGCGGTTC TGACCTGCTC GAATCATTCA 
    GCATCCCAGG AGTGTGGATT CCTGATCAGA TCAGGACCAT ATGCAAGGAC 
    TTTGGTGTTA TTTGCATACG TAGAGAAGGA AAAGATGTTG AGAAAATATA 
    TAATATCCAG CAGCGAGACA CTGAGCGAAT GCAGGGACAA TATCATTTCA 
    GTTGATGAGA TTGTTCCAAA CCAAATAAGT TCGTCTAGAG TAAGGTATTG 
    TTCTTTCCTA CATTTGTTTG AAGTTTATCA TGGTCCATTA TTGTATTCCC 
    AACATCCTCT ATTGGATACT GGCATGCGAG TCCAGCATTT ATGCACAAAT 
    CGAATTATAC AGAGAATGCA TAAAAAGATG CCTATCAATA AAGTATCTAA 
    TCTGTGATGA AGTCATCCAA TATATTGGAG AACACAAACT CTACAAGGAA 
    GCTGGTGGCA GTGATACAAG ATAATGACAT GGATTGAAGT TTCTGGCTCA 
    TCTGCAAAGG ATGTTGTTAA ACAGTTGAAG GTAAAGATAT AGATACATAT 
    TTTCTATCTA TTCATTCTCC CTGTTTACCT ATAGTCGAGC TCACAACGTT 
    GCATGTGTGG TGATGCCTTA TGTATGATAC CACACCTGCA CATGTTTTGA 
    TTTATGCTAG CCCATTGTGC AGCTCTGGAC TCTGTATACA TGAAACTCCA 
    AATATTGTTG TGCCATGCAA CATTAGAGTC ATTGAGGCAC ATGAATTGTT 
    CAAGTGGTGT TCAATGTTTT CCATGAGGCC TTATCCAAAG TTTCTTAACC 
    ATTATTACCT TATCTGAAAC TTTCGGAGCC TTTTAGTGGA TATTTAGAAA 
    CTCCGACCTT GTGCTAGGGA TTCTACATAT AGTGGGATAT GTTACAAAGG 
    CCATTATTTG GCCATTATTT GATCTCATCA AAAGCAGCCA TCAAGTGGAT 
    TTGAATCTTG TAACAGCCAT GTTTAAAGAG GATTTGAATA TTGTAACATC 
    CATGTTTAAA GGCATAAATC ATCCTTATGG ATATATTGAT GT

    Gene models with high sequence identity

    1. AT5G55810.1 [+] show detail - nicotinate/nicotinamide mononucleotide adenyltransferase
      E-value: 3e-62; Score: 37.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Probable nicotinate-nucleotide adenylyltransferase 0.00062
    HMMPanther Probable nicotinate-nucleotide adenylyltransferase 0.00028
    HMMPanther Probable nicotinate-nucleotide adenylyltransferase 1.1e-26
    HMMPfam Cytidylyltransferase 7.9e-10
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 6.7e-18
    superfamily Nucleotidylyl transferase 4.8e-16

    See the detailed result >

    AT5G55810.1

    Model type
    Protein coding
    Short Description
    nicotinate/nicotinamide mononucleotide adenyltransferase
    Curator Summary
    encodes a bi-functional enzyme that expresses both nicotinamide-nucleotide adenylyltransferase (2.7.7.1) and nicotinate-nucleotide adenylyltransferase (2.7.7.18)activity.
    Computational Description
    nicotinate/nicotinamide mononucleotide adenyltransferase (NMNAT); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Probable nicotinate-nucleotide adenylyltransferase (InterPro:IPR005248), Cytidylyltransferase (InterPro:IPR004820); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR