K37622

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37622

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37622

Determination of introduced cDNA(s)

  • J023078A07 - Rice Full-length cDNAs - Original: J023078A07

    full reading [+] show sequence

    Nucleotide sequence: J023078A07 - full reading 
    GGGCGTGCGA GACGGCGTCG CGTCGCTCGC CACGACGGAC ATGCAGCACC 
    TGCACGGCGA CGTGCTCGAG TCGGCGGTGG AGCGCGTGCC GGCGCCCGAT 
    CTCGCCGCCG CGGCGCTGGT GTCACGGGAG TGGCTCCGCG CGGTGCGCGC 
    CGCGCTGCGA CGGCGCATGC TGCGGCTGCC GTGGCTCGTC GTCCACGTGA 
    TCCATCTCCG GGGCCAGCGG CGCCTCGCCG CGGCTTACGA CCCGCGCTCC 
    GGGGCGTGGC TCGCCGTGCC CACGGCGCCA CCGGCGCGCC ACGGCGCGAC 
    GTCGCCGCCG CAGCCGCACT CGCACGTCCG CCTGATGCGG GGCGCGAGCG 
    GGGACCGCGT CTGCGCGCTC TCGCTCTCCG GGCTCGCCGT GGCGCGGGAC 
    GCTCTCGGGA TGGACGACGA CGCGCTCGTC GTCGCGCTCA AGGCCCCCGG 
    CGTGTGGCGC GTCGATCCGG TGCTCGCCGC GGTGGGTGAC CGCGTGGTCG 
    CCATGGGCGG CGCGTGCCGG CTGGCGCTGG GTGACGGGGA GGACACCTCG 
    GCCGTCGAGG TCCACGAGCG CGGCGGCTGG ACGCACTGCG GCGCGGTGCC 
    GACCGCGCTC CGGGAGTCCG CGGCGGCGGC AGCGACGTGG CTCTCGACGG 
    CGGCGACGGA TCAGAGAGTG TACGTCGCGG ACAGAGCCAC GGGGACGGCG 
    AGCTGGTTCG ACCCGGCGAA GCAGCAGTGG GGACCCACCT CCCGCCTCCG 
    CCCTGACGCC ACCGTCTCCA CATGGGGCCT CGCCGCCGGC CGCGCCGGCG 
    CCGAGAAGAT CATCCTGTTC GGAGTGAAGC ATGCAGACAG CCGAGTCGTC 
    ATCCGATCAT GGGAGGTGGA CGGCGACAGC CTCTCCCTGT CCCATGGCGC 
    GGCGGCGGCG CACGACACGA TGCCGAGCGA GATGTCCGAG AGGCTGTTCC 
    CGCACGGCGA CGACGGCGAG GAGGAGACGT CGTCGCCGTC GATCGGGGTG 
    TGCGGCAACA CCGCCGGTGG GTACGTGTAC AATGCGGCCG TGCCGGCGAC 
    GGGCGCCGTC CTCTACGAGC TCCGGCGGGG CGGGGTGGAG GGCGGCGGCG 
    TGGAGCGGTG GGCGTGGGTT GCGTGCGCGC CGGTGGTGGC CGAAGCGGAG 
    GCGTTGGGAC GCGTCATCCT CGCGTGTTCG CCGGTGGGGC TGCACGAGCT 
    TACGGACGAA CGGCTTGCAC ACTGAACTAA TAATGGCTAT CGTGACATGT 
    TGTCGATAGC CAGTTGAGCT TGTAATAAGC ATATAGGGCT GTTACACTCT 
    GAAAAATAAG TTTGGATACT CCCACCGGTT TTATAATAAT TCTCGTTGTT 
    TTGGACAATA ATAACACGGC ATATTCACT

    Gene models with high sequence identity

    1. AT1G23390.1 [+] show detail - Kelch repeat-containing F-box family protein
      E-value: 2e-11; Score: 67.40

     

    InterPro Scan Digest

    See the detailed result >

    AT1G23390.1

    Model type
    Protein coding
    Short Description
    Kelch repeat-containing F-box family protein
    Computational Description
    Kelch repeat-containing F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G24760.1); Has 146 Blast hits to 146 proteins in 15 species: Archae - 0; Bacteria - 1; Metazoa - 1; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR