K37623

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37623

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37623

Determination of introduced cDNA(s)

  • J033046O20 - Rice Full-length cDNAs - Original: J033046O20

    full reading [+] show sequence

    Nucleotide sequence: J033046O20 - full reading 
    GTGAAAGGCA GAAGAAATCA AGAAACCAAC CACCAACTAG CTACTGTAGT 
    TGACTGACAG TGATAGTGGC AGTCATGCAG GTCGTGGGAA CCGTGCGTGT 
    CAGTGGCTGC GGCGCGGTGG TGGCGCCCTC GCGCCGGCAG TGCCGCGTGT 
    CCGCGGCGGT GCTGACGGCC GCGGAGACGG CGACGGCGAC GCGGCGCCGC 
    GTGACGCACT CGATGCCGCC GGAGAAGGCG GAGGTGTTCC GGTCGCTGGA 
    AGGGTGGGCG AGGTCGTCGC TGCTGCCGCT GCTCAAGCCC GTGGAGGAGT 
    GCTGGCAGCC GACGGACTTC CTGCCGGACT CGTCGTCGGA GATGTTCGAG 
    CACCAGGTCC ACGAGCTCCG CGCGCGCGCC GCGGGGCTCC CCGACGAGTA 
    CTTCGTCGTG CTGGTCGGGG ACATGATTAC CGAGGAGGCG CTGCCGACGT 
    ACCAGACCAT GATCAACACG CTCGACGGCG TCCGCGACGA GACCGGCGCC 
    AGCGCCTGCC CCTGGGCCGT CTGGACGCGC ACCTGGACCG CCGAGGAGAA 
    CCGCCACGGC GACATCCTCG GCAAGTACAT GTACCTCTCC GGCCGCGTCG 
    ACATGCGCAT GGTCGAGAAG ACCGTCCAGT ACCTCATCGG CTCCGGCATG 
    GATCCGGGGA CGGAGAACAA CCCGTACCTG GGGTTCGTGT ACACCAGCTT 
    CCAGGAGCGC GCGACGGCCG TGTCGCACGG GAACACGGCG CGCCTCGCCA 
    GGGCGCACGG GGACGACGTC CTGGCGCGCA CCTGCGGCAC CATCGCCGCC 
    GACGAGAAGC GGCACGAGAC GGCGTACGGG CGCATCGTGG AGCAGCTGCT 
    GCGGCTCGAC CCGGACGGCG CCATGCTCGC CATCGCCGAC ATGATGCACA 
    AGCGGATCAC CATGCCCGCG CACCTCATGC ACGACGGCCG CGACATGAAC 
    CTGTTCGACC ACTTCGCCGC CGTGGCGCAG CGCCTCAACG TCTACACCGC 
    GCGCGACTAC GCCGACATCG TCGAGTTCCT CGTCAAGCGG TGGAAGCTGG 
    AGACCCTGGA GACTGGGCTC TCCGGCGAGG GCCGGAGGGC CCGGGACTTC 
    GTGTGCGGGC TCGCGAAGAG GATGCGGCGG GCCGCGGAGC GGGCTGAGGA 
    CAGGGCTAAG AAGGATGAGC AGAGGAAGGT CAAGTTCAGC TGGATCTATG 
    ATAGGGAAGT GATTGTCTAG TTTAACTTGT CTTGGTTGAA TTCTGAATTC 
    CCAGTCCTAG ATGATCATGC CATTTCGTTA TCATCTCTGT TCTTGTGTTC 
    TCTTTGCAAT GCAGTAAATT GGTAATAGTT AATGGTGCTT TGATCTTGG

    Gene models with high sequence identity

    1. AT1G43800.1 [+] show detail - Plant stearoyl-acyl-carrier-protein desaturase family protein
      E-value: 2e-136; Score: 482.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Fatty acid desaturase, type 2 1.5e-170
    Gene3D Ribonucleotide reductase-related 5.6e-150
    Coil coiled-coil 0
    superfamily Ferritin/ribonucleotide reductase-like 4.6e-152
    HMMPIR Fatty acid desaturase, type 2 3.6e-276

    See the detailed result >

    AT1G43800.1

    Model type
    Protein coding
    Short Description
    Plant stearoyl-acyl-carrier-protein desaturase family protein
    Computational Description
    Plant stearoyl-acyl-carrier-protein desaturase family protein; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding; INVOLVED IN: oxidation reduction, fatty acid metabolic process, fatty acid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067), Stearoyl-ACP desaturase, conserved site (InterPro:IPR005803); BEST Arabidopsis thaliana protein match is: Plant stearoyl-acyl-carrier-protein desaturase family protein (TAIR:AT2G43710.1); Has 962 Blast hits to 955 proteins in 224 species: Archae - 0; Bacteria - 456; Metazoa - 2; Fungi - 0; Plants - 446; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR