K37631

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37631

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)

Invisible phenotypes

Original: K37631

Determination of introduced cDNA(s)

  • J033030K18 - Rice Full-length cDNAs - Original: J033030K18

    full reading [+] show sequence

    Nucleotide sequence: J033030K18 - full reading
    AAAAGTCATC GCCATCATCG ATCGATCGAT CACAACTACT AGAAATCCAG 
    CCAAGAAGAT CGAGACCGGA TACAGCTAGC AATCCATCCA AGAAGATCGA
    GAGAGCGGAT ACAGCTAGCC TAGCTACGCG AAGGATCAGA TCATCGGCAT
    GGAGCTGGAG CTTGGGCTGG CGCCACCGAA TTCCGGTCAT CTCGTCGTCG
    ACGAGCTCAG CAGCAGCAGC AGCAGCGGCG GCGGCAGCGG CAGCGCGCCG
    GTGTCTGCCT CGTCGGCCGG GAAGAGGGGA TTCAGGGAGG CGTTCCAGGA
    GACGCTGCTG CTCTTCGACG ACGGCAGCTG CTGCAACACC AGCGACGACG
    ATTGCAGGAG GAGGAAGAAG ACGGTGGTGG GGTGGCCACC GGTGAGCTCG
    GCGCGGCGGG CGTGCGGCGG CGCCAACTAC GTGAAGGTGA AGAAGGAAGG
    CGACGCCATC GGGAGGAAGG TTGATTTGGC CCTCCATTCC TCCTACGACG
    AGCTCGCTGC CACGCTCGCC CGCATGTTCC CCACCAACGA CCACCAAGGC
    GAGAAGAAAA TGGCCAATGA TGATCATGGC GATGCCGCTG GACCTGTGGT
    CACCTACGAG GATGGTGATG GGGATTGGAT GCTGGTTGGG GACGTGCCAT
    GGGATGATTT TGCACGATCT GTGAAACGCC TGAAGATACT GGGTTAACTG
    AACTGAAGGA GATGCATGCG TGAGTTGATG GAGCACAGCT CGGTTTTGGT
    TGCCTGGCAT CTGCGTGTGG GTGTGCACTG ATGTATGTAC ATGTTTTCGT
    TTTCAGTCAG GATGTTAGGA CGAGAGAAAG AGCTTTCTGT CAAAGACTAT
    ATACTGCTAG CTTATATATA CTGTAGTTGG GCACATCTCA TGTGTGCCCA
    GGGCTAGGTT TTGAGAATGT TTACAGAGTT CTGTGTTTTT ACACCTTCTA
    TATGTTTTGC AAACTGATCT TGTACTATAA TACTACTTTT ATTTATTTCT
    CTCTTTTTTT TC

    Gene models with high sequence identity

    1. AT3G23030.1 [+] show detail - indole-3-acetic acid inducible 2
      E-value: 1e-19; Score: 94.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Aux/IAA-ARF-dimerisation 30.245
    HMMPfam AUX_IAA 1.3e-36

    See the detailed result >

    AT3G23030.1

    Model type
    Protein coding
    Short Description
    indole-3-acetic acid inducible 2
    Curator Summary
    auxin inducible gene expressed in the nucleus
    Computational Description
    indole-3-acetic acid inducible 2 (IAA2); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible (TAIR:AT4G14560.1); Has 2163 Blast hits to 2162 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2162; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR