K37728

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37728

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37728

Determination of introduced cDNA(s)

  • J023004J15 - Rice Full-length cDNAs - Original: J023004J15

    full reading [+] show sequence

    Nucleotide sequence: J023004J15 - full reading
    TTTCTCTCTC TCTCATTCTT GTGTTTCTTC TCGATCGATC TCTCGATTTC 
    TCTCTGTGCA CCAGCATCAG CTATGGTGTC CGACGCCAGC AAGAAGAAGG
    CGGCGCAGAA GAAGGCCGCC GCCGCTGCCA AGAGGGGTGA CAAGGCCAAG
    GCCGCCATTA CTCTCTCCGA GCGCACCTGC ACCGCCGTCC TCACCTCCCA
    TCCCCTCTCC CGCGACATCC ACATCGAGTC CCTCTCCCTC ACATTCCACG
    GCCATGACCT GCTTCTTGAC ACCGACCTGG AGCTCAACTA CGGCAGGCGA
    TATGGTTTGC TTGGCTTAAA CGGCTGTGGA AAGTCCTGTC TCCTCAAAGC
    TATAGGATGC CGGGAGCTTC CTATCCCTCC ACACATGGAC ATCTATCATC
    TCACCCATGA GATCGAGGCT TCCGACATGT CTGCGCTACA AGCTGTCATC
    AGCTGTGACG AACAGAGACT CCAGCTCGAG AAGGAGGCTG AAATCTTGGC
    CGCTCAAGAT GACGGTGGCG GCGAAGCCCT GGACCGCGTT TATGAACGCT
    TAGAAGCCAT CGACGCATCC ACCGCTGAAA AGCGTGCTGC AGAGATTTTG
    TTTGGCTTGG GTTTTAACAA GCACATGCAG GCAAAGAAAA CCTGTGATTT
    CTCTGGCGGT TGGCGCATGA GGATCGCTTT GGCTAGGGCG CTCTTCATGA
    ATCCAACTAT CCTTTTGCTT GATGAGCCCA CCAATCATCT AGATCTTGAG
    GCCTGTGTCT GGCTGGAGGA AACCTTGAAG AAATTTGACC GTATACTTGT
    CGTCATATCA CACTCCCAGG ACTTCCTAAA TGGAGTATGT ACAAATATCA
    TCCACATGCA AAACAGGAAG CTCAAGCTAT ACACTGGCAA CTATGACCAG
    TATGTCCAAA CACGAGCCGA GCTTGAAGAA AATCAAATGA AACAATACAG
    ATGGGAGCAG GACCAGATTG CCTCGATGAA GGAGTACATT GCACGGTTTG
    GTCACGGATC TGCCAAGCTG GCCCGACAGG CTCAAAGTAA AGAGAAAACT
    CTTGCTAAGA TGGAGCGTGG TGGGCTCACG GAGAAGGTTG TAAGGGATAA
    GGTATTGACG TTCCGCTTCA CTGATGTTGG CACGCTACCA CCTCCAGTGC
    TGCAGTTTGT GGAGGTCACA TTTGGGTACA CACCAGACAA CCTGATCTAC
    AAGAACCTAG ATTTTGGTGT TGACCTTGAC TCAAGGGTGG CGCTGGTTGG
    TCCTAATGGG GCTGGGAAGA GTACGCTCCT TAAACTCATG ACAGGTGATC
    TCATACCGCT GGACGGCATG GTGAGGCGAC ACAACCATCT CAGGATCGCA
    CAATTCCACC AGCACCTTGC AGAGAAGCTG GACCTGGACA TGTCAGCTCT
    GCAGTACATG ATGAAGGAAT ACCCAGGGAA CGAGGAGGAG AGGATGAGGG
    CAGCCATCGG CAAGTTTGGG TTGTCAGGGA AGGCACAGGT AATGCCAATG
    AGGAACCTGT CGGACGGGCA GAGGAGCAGA GTGATATTTG CATGGTTGGC
    GTGGAGGGAG CCACACATGC TGCTGCTGGA TGAGCCAACG AACCATCTGG
    ACATTGAAAC AATCGACTCT CTTGCAGAGG CGCTGAATGA ATGGGATGGA
    GGGCTTGTGC TGGTGAGCCA TGACTTCAGG CTGATCAACC AAGTGGCGCA
    GGAGGTATGG GTGTGCGAAA AGCAGGCGGT GACCAGGTGG GAAGGTGACA
    TCATGGAGTT CAAGGAGCAC CTGAGGAGCA AGGCCGGAGT GGACGATTGA
    GTTGAGTTGA GTTGAGTAGT TTTGATCTTG CTGCCTGGCC CGGAGAGGAG
    ATACCATCAC TCTGCTAGTT ACTAGTATTT CTTCGGCTGT TACTAAACTA
    TACTGCCCAG CCTAACGGGG ACGACGACTG CATCATCATC TCTTGATCTC
    TCTCTCTTAG TTAAGTTGGA TGCTTGTCAC GGATGTTTGT ACCTGATCTC
    CATCAACTAC ATCTGATGCT ATAGCCCATA TGATGTACCG TCCTCTTCTT
    GGGGTCTCTG GAGAATGAGG AAACAGCAAG ATCCAGCCAG CATAGCATGT
    ATGTATAGTG TAATTAGCTG GTTTGTTGGC GGTGCACATG CATAAGATAT
    ACTTCCTCCG TTTCATATTA TAATACTATC TATTATTGCC CACATTCATA
    TATATGTCTA GATTCATTAG CATCTATATG AATGTGGGCA ATGATAGAAA
    GTCTTATAAT ATGAAACGGA GGGAGTATTA TCTTGGTTTG CACTTGCATG
    ATCACCTGCT GTAGTTATTA TTATCAGTGA CCAAGTTCCC CTAGCTAGCA
    GTAGCACTCC ATGAAAAGAT ATCTACATGA AACTGTACCA CCCCCACGAT
    ATTATATATG AGATTGGATT TTAAACT

    Gene models with high sequence identity

    1. AT5G60790.1 [+] show detail - ABC transporter family protein
      E-value: 0; Score: 899.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 8.8e-29
    Gene3D no description 4.6e-32
    ProfileScan ABC transporter-like 14.786
    ProfileScan ABC transporter-like 15.226
    HMMPfam ABC transporter-like 1.1e-14
    HMMPfam ABC transporter-like 5.5e-16
    HMMPfam Protein of unknown function DUF1602 2.9e-07
    PatternScan ABC transporter, conserved site 0
    Coil coiled-coil 0
    HMMSmart ATPase, AAA+ type, core 1.7e-05
    HMMSmart ATPase, AAA+ type, core 0.00022
    superfamily P-loop containing nucleoside triphosphate hyd 8.1e-44
    superfamily P-loop containing nucleoside triphosphate hyd 1.8e-42
    HMMPanther ATP-BINDING CASSETTE, SUB-FAMILY F (GCN20), M 1.3e-291
    HMMPanther ATP-BINDING TRANSPORT PROTEIN-RELATED 1.3e-291

    See the detailed result >

    AT5G60790.1

    Model type
    Protein coding
    Short Description
    ABC transporter family protein
    Curator Summary
    member of GCN subfamily
    Computational Description
    GENERAL CONTROL NON-REPRESSIBLE 1 (GCN1); FUNCTIONS IN: transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 3 (TAIR:AT1G64550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR