K37812

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37812

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37812

Determination of introduced cDNA(s)

  • J033060J18 - Rice Full-length cDNAs - Original: J033060J18

    full reading [+] show sequence

    Nucleotide sequence: J033060J18 - full reading
    GACAACATGT GCTGTGAATT TGAAAGGGGA AATACCAGCT ATGGAAGCAG 
    CGATAGTGAG TGCTTCGACG GGAGTGATGC GTTCCCTCCT CGCCAAGCTC
    GCAAACCTTC TTGGTGGTGA GTACAAGCTA CTTAAGTGGC TCCGTAGGGA
    GATGGAGTTC CTCGAGAGCG AGCTCCGTAG CATGAGCATC TTCTTGGAGA
    GGTTGGAGGA CACGCAAAAG CTTCACCCCC AAATGAAGGA TTGGAGGGAT
    CGAGTACGCG AGTTGGCATA CGACATTGAG GATTGCATCG ACGACTTCAT
    ACTACAGCTT GATTCCAAGG ATGCGAAGGT TGGGTTTGGG CAAAAGCTTC
    TTGCATCCCG TAGGATTGGC CACATGATTC GAGAACTCAA GGCGCGTGTA
    ATGGAGGAGA GTGAGAGACA AAGGAGGTAC ATGCTTGATG GCTTGGCATC
    TGGGCCTAGT GTTCGTGTGA AGGTTGATCC ACGGCTATCG GCTCTCTATG
    TCGACGAGGA CAGATTAGTT GGTATTGATG CCCCGAGAGA TGAGATCATT
    GGGCGGCTGT TGGACAAGCG GAGAAGTGCC TCAGCAAAAC AGGTCATGAC
    AATTTCCATC GTGGGTTGCG GAGGATTGGG GAAGACCACC CTTGCCAATC
    AAATTTACTG CAAAATCAAA GGAAAATTTG AGTGCGCAGC TTTTGCGTCA
    GTGTTCCAAA ATCCCAACAC CAAGAAGGTT TTGACGAATA TTCTTTCCCA
    AGTGGCCACT ACTGCTGCTG TGGAAGACGA TGAGCAAGCC ATCATCAACA
    AGCTAAGGGA ATACCTTAGT GACAAGAGGT ACATTGTCAT AGTTGATGAT
    ATATGGGATA TGCAAATATG GAAATTTATT GAATGTGCGT TGGTCAAGAA
    CTGCCGTGGT AGCAGAATTA TCACAACAAC ACGTATACAT GATATTGCTA
    AATTGTGCTG TTCATCTCAT GGCGATTATA TTTACGAAAT GAAGCCTCTT
    GGAGTTATTG ACTCCAAAAT ATTGTTCGAC AAAAGAATTT TTGATCCAGA
    GGAAAGGCGC CCACCGCAGT TGACAGAAGT TTCTGAGGAA ATATTGAAAA
    AATGTGGTGG TTTGCCTTTG GCGATCATTT CCATATCAAG TTTGTTGGCA
    AGCAAACCAA AGTCAAAAGA TCAATGGGAC AGGGTCAAGG TTTCTCTTAG
    CTCTACGCTT GAAAGGACTC CAGACATTGA AACCATGGAA TGGGTGCTAT
    CACTCAGTTA CTCTGATCTT CCTAATCATT TAAAAACATG TCTGTTATAT
    TTGAGTATAT TCCCTGAGGG CTATGAGATA AACAGGGAAC GTTTGGTGAG
    TAGATGGATT GCTGAAGGAT TCATTTACAA AAAACATGGA CAAAATCCAT
    ATGAAGTGGG GGACAGTTAT TTTAATGAGC TTGTGAACAG AAGCTTGATT
    CAACCAGCAA ACATTAAGCC TGATGGTCAG ACAAATGCTT GTCGAGTGGA
    TGACACCGTT CATGATTTTA TTGTGTCCAT GTCAGTTGAA GAAAATTTCG
    TTACATTATT TGGTGGTTCA AAATTGGTAC CAAGGTCACA TGGTAAGGTT
    CGTCGATTAT CTATTCAAAA TGGCGGCATT CAAGAAAATA TTGTCACATC
    AACGCACTTG GTTACATCGC AAGTCCGGTC ACTAACTTTA TTTGCTGTAG
    AAATGCCATC TCTTTTAGGT TTTGGTATGT TACGTGTATT GGACCTAGAA
    GATTGTTATG CATTAGAAGA CCATCATCTT ACGAACCTGG AAAGGCTAGT
    CCAGTTACGG TATTTGAGTA TAAGAACATC ACCCATTAGT GAACTCCCGA
    AACAAATTGG GCAGCTTCAA TATCTGGAAA CACTAGATTT AAGAGCTACG
    GGTGTGGAAG AATTGCCATC AACCATTGGT AGACTAAAGA GTTTGGTCCG
    TTTATTCGTT GATTATCATG TTAAATTACC AAAAGAAATC AGCAATATGC
    ATGCACTGGA AGAGCTAACA AGTTTCTCAG CCTTGATGTA CTCTCCAGAC
    TTTCTGAAAG AACTAGGTCA GCTTACAAAC ATGAGGGTGC TCCGAGTAAT
    TTGTGACTGT GATAGCTTTA AAGGTGATGC AGGAAGTTGC TTGGAAAATT
    TAGCTTCTTC TTTATGTAAT CTAGGCACAT ATAACCTTCA TTCCCTTTTT
    GTTGACATCA ATGGATATGG TGAAGACAAC TTCTCACTAG ATACATGGCA
    ACCTGTTCCA TCTAGACTAA GAAGATTTTC CATTGACCGG TGGTGCCCCA
    TCAATAAGAT TCCGAATTGG GTGGGTTCAC TGATCAACCT TGAAGAGTTA
    GTCCTATATG TCAACAAAAT TTGGCAGGAG GATTTCGAAT TGCTAGGACA
    TATGCCTGCT CTGTCATCTC TGACCATATA CTCAAATACT GCCCTTCAAG
    GGAGGATCAT CATCAGTGGA TTCCATTCTA CCAAGTTTTT CAAGTTCTAT
    TGCAATCCTG CAGGGTTAAC CTTTGACGCA GGAAGTCTGT TAAAGCTCGA
    ATGCCTTGAT GTCATAATGA ATGTGTTCAA CACGAAGTCT TCAAATGGTA
    GCTTTGATTT TGGCATTCAA TATCTTACCA ACCTTAGAAA TGTCTACATT
    CAACTTGATT GTAATGGGTC GACTGGTGGA GAATTGGAAG CAGCTAAAGC
    TTCCATCAAG AGCTCAGTAA ACAAACTTCC AGGACAGCCT AAGCTGAACT
    TGAGCACATT GAATGAAAAT ATGTTAGTCC ATGAAGAAGC TAATTAATTA
    AATGGAAGGG GACGTAAATT TCGAGTACGA ACATTGCAGG TATCAATTTC
    GGTTTTGATT TTTTTTTTTT TGCAGAAAGG ACCAGTACCA AAAATACCAT
    TTGTAATTTA TAGTCTAACA ATTCTTTACC CATCAAAATA ATTCTCC

    Gene models with high sequence identity

    1. AT3G46730.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 7e-61; Score: 233.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 5e-32
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-13
    Gene3D no description 5.1e-12
    HMMPfam NB-ARC 4.5e-61
    HMMPanther SHOC2 6.6e-08
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6.6e-08
    FPrintScan Disease resistance protein 5.7e-16
    FPrintScan Disease resistance protein 5.7e-16
    FPrintScan Disease resistance protein 5.7e-16
    FPrintScan Disease resistance protein 5.7e-16
    Coil coiled-coil 0

    See the detailed result >

    AT3G46730.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Computational Description
    NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT3G46530.1); Has 14658 Blast hits to 14197 proteins in 483 species: Archae - 6; Bacteria - 489; Metazoa - 440; Fungi - 102; Plants - 13534; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR