K37812

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37812

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37812

Determination of introduced cDNA(s)

  • J033060J18 - Rice Full-length cDNAs - Original: J033060J18

    full reading [+] show sequence

    Nucleotide sequence: J033060J18 - full reading 
    GACAACATGT GCTGTGAATT TGAAAGGGGA AATACCAGCT ATGGAAGCAG 
    CGATAGTGAG TGCTTCGACG GGAGTGATGC GTTCCCTCCT CGCCAAGCTC 
    GCAAACCTTC TTGGTGGTGA GTACAAGCTA CTTAAGTGGC TCCGTAGGGA 
    GATGGAGTTC CTCGAGAGCG AGCTCCGTAG CATGAGCATC TTCTTGGAGA 
    GGTTGGAGGA CACGCAAAAG CTTCACCCCC AAATGAAGGA TTGGAGGGAT 
    CGAGTACGCG AGTTGGCATA CGACATTGAG GATTGCATCG ACGACTTCAT 
    ACTACAGCTT GATTCCAAGG ATGCGAAGGT TGGGTTTGGG CAAAAGCTTC 
    TTGCATCCCG TAGGATTGGC CACATGATTC GAGAACTCAA GGCGCGTGTA 
    ATGGAGGAGA GTGAGAGACA AAGGAGGTAC ATGCTTGATG GCTTGGCATC 
    TGGGCCTAGT GTTCGTGTGA AGGTTGATCC ACGGCTATCG GCTCTCTATG 
    TCGACGAGGA CAGATTAGTT GGTATTGATG CCCCGAGAGA TGAGATCATT 
    GGGCGGCTGT TGGACAAGCG GAGAAGTGCC TCAGCAAAAC AGGTCATGAC 
    AATTTCCATC GTGGGTTGCG GAGGATTGGG GAAGACCACC CTTGCCAATC 
    AAATTTACTG CAAAATCAAA GGAAAATTTG AGTGCGCAGC TTTTGCGTCA 
    GTGTTCCAAA ATCCCAACAC CAAGAAGGTT TTGACGAATA TTCTTTCCCA 
    AGTGGCCACT ACTGCTGCTG TGGAAGACGA TGAGCAAGCC ATCATCAACA 
    AGCTAAGGGA ATACCTTAGT GACAAGAGGT ACATTGTCAT AGTTGATGAT 
    ATATGGGATA TGCAAATATG GAAATTTATT GAATGTGCGT TGGTCAAGAA 
    CTGCCGTGGT AGCAGAATTA TCACAACAAC ACGTATACAT GATATTGCTA 
    AATTGTGCTG TTCATCTCAT GGCGATTATA TTTACGAAAT GAAGCCTCTT 
    GGAGTTATTG ACTCCAAAAT ATTGTTCGAC AAAAGAATTT TTGATCCAGA 
    GGAAAGGCGC CCACCGCAGT TGACAGAAGT TTCTGAGGAA ATATTGAAAA 
    AATGTGGTGG TTTGCCTTTG GCGATCATTT CCATATCAAG TTTGTTGGCA 
    AGCAAACCAA AGTCAAAAGA TCAATGGGAC AGGGTCAAGG TTTCTCTTAG 
    CTCTACGCTT GAAAGGACTC CAGACATTGA AACCATGGAA TGGGTGCTAT 
    CACTCAGTTA CTCTGATCTT CCTAATCATT TAAAAACATG TCTGTTATAT 
    TTGAGTATAT TCCCTGAGGG CTATGAGATA AACAGGGAAC GTTTGGTGAG 
    TAGATGGATT GCTGAAGGAT TCATTTACAA AAAACATGGA CAAAATCCAT 
    ATGAAGTGGG GGACAGTTAT TTTAATGAGC TTGTGAACAG AAGCTTGATT 
    CAACCAGCAA ACATTAAGCC TGATGGTCAG ACAAATGCTT GTCGAGTGGA 
    TGACACCGTT CATGATTTTA TTGTGTCCAT GTCAGTTGAA GAAAATTTCG 
    TTACATTATT TGGTGGTTCA AAATTGGTAC CAAGGTCACA TGGTAAGGTT 
    CGTCGATTAT CTATTCAAAA TGGCGGCATT CAAGAAAATA TTGTCACATC 
    AACGCACTTG GTTACATCGC AAGTCCGGTC ACTAACTTTA TTTGCTGTAG 
    AAATGCCATC TCTTTTAGGT TTTGGTATGT TACGTGTATT GGACCTAGAA 
    GATTGTTATG CATTAGAAGA CCATCATCTT ACGAACCTGG AAAGGCTAGT 
    CCAGTTACGG TATTTGAGTA TAAGAACATC ACCCATTAGT GAACTCCCGA 
    AACAAATTGG GCAGCTTCAA TATCTGGAAA CACTAGATTT AAGAGCTACG 
    GGTGTGGAAG AATTGCCATC AACCATTGGT AGACTAAAGA GTTTGGTCCG 
    TTTATTCGTT GATTATCATG TTAAATTACC AAAAGAAATC AGCAATATGC 
    ATGCACTGGA AGAGCTAACA AGTTTCTCAG CCTTGATGTA CTCTCCAGAC 
    TTTCTGAAAG AACTAGGTCA GCTTACAAAC ATGAGGGTGC TCCGAGTAAT 
    TTGTGACTGT GATAGCTTTA AAGGTGATGC AGGAAGTTGC TTGGAAAATT 
    TAGCTTCTTC TTTATGTAAT CTAGGCACAT ATAACCTTCA TTCCCTTTTT 
    GTTGACATCA ATGGATATGG TGAAGACAAC TTCTCACTAG ATACATGGCA 
    ACCTGTTCCA TCTAGACTAA GAAGATTTTC CATTGACCGG TGGTGCCCCA 
    TCAATAAGAT TCCGAATTGG GTGGGTTCAC TGATCAACCT TGAAGAGTTA 
    GTCCTATATG TCAACAAAAT TTGGCAGGAG GATTTCGAAT TGCTAGGACA 
    TATGCCTGCT CTGTCATCTC TGACCATATA CTCAAATACT GCCCTTCAAG 
    GGAGGATCAT CATCAGTGGA TTCCATTCTA CCAAGTTTTT CAAGTTCTAT 
    TGCAATCCTG CAGGGTTAAC CTTTGACGCA GGAAGTCTGT TAAAGCTCGA 
    ATGCCTTGAT GTCATAATGA ATGTGTTCAA CACGAAGTCT TCAAATGGTA 
    GCTTTGATTT TGGCATTCAA TATCTTACCA ACCTTAGAAA TGTCTACATT 
    CAACTTGATT GTAATGGGTC GACTGGTGGA GAATTGGAAG CAGCTAAAGC 
    TTCCATCAAG AGCTCAGTAA ACAAACTTCC AGGACAGCCT AAGCTGAACT 
    TGAGCACATT GAATGAAAAT ATGTTAGTCC ATGAAGAAGC TAATTAATTA 
    AATGGAAGGG GACGTAAATT TCGAGTACGA ACATTGCAGG TATCAATTTC 
    GGTTTTGATT TTTTTTTTTT TGCAGAAAGG ACCAGTACCA AAAATACCAT 
    TTGTAATTTA TAGTCTAACA ATTCTTTACC CATCAAAATA ATTCTCC

    Gene models with high sequence identity

    1. AT3G46730.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 7e-61; Score: 233.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 5e-32
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-13
    Gene3D no description 5.1e-12
    HMMPfam NB-ARC 4.5e-61
    HMMPanther SHOC2 6.6e-08
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6.6e-08
    FPrintScan Disease resistance protein 5.7e-16
    FPrintScan Disease resistance protein 5.7e-16
    FPrintScan Disease resistance protein 5.7e-16
    FPrintScan Disease resistance protein 5.7e-16
    Coil coiled-coil 0

    See the detailed result >

    AT3G46730.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Computational Description
    NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT3G46530.1); Has 14658 Blast hits to 14197 proteins in 483 species: Archae - 6; Bacteria - 489; Metazoa - 440; Fungi - 102; Plants - 13534; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR