K37818

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37818

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37818

Determination of introduced cDNA(s)

  • J013097E10 - Rice Full-length cDNAs - Original: J013097E10

    full reading [+] show sequence

    Nucleotide sequence: J013097E10 - full reading 
    GCTACGACGA GATAAAGCGC CACGTCCAGC GACGAGCCAG TGAGCCTCCG 
    TTCTCCAGGG CGACGGCAGC AAATCGCAGC CATGCTCCGC GCTCCGCCTC 
    AGGCGCCGCG GGCCTCGCGA CGGCCGCCTC CGCCGCGGTG CTCCCCTGCC 
    GCAGGCGCGT CGCCGCCGCC GTCGGCCGGC GGCATCCGGC GGCTGGTGCT 
    GACGCCGGAG GGCCGGGCGA AGCTGGACGC GCGGCCGGAC CGCGACTTCT 
    ACGCGTTCCC GCGGCTCGTC AAGCACGTGG ACGACGGCTT CCTCGCGGCG 
    CTCGCCGACC TCTACCGCGA GCGCCTCCGC CCCGGGTGGG ACGTGCTGGA 
    CCTCATGAGC TCCTGGGTCA GCCACCTGCC GCCGGAGCGC GAGCTCCCGC 
    TCCGCCGCGT CGTCGGCCAC GGCCTCAACG CCCAGGAGCT CGCCAAGAAC 
    CCACGCCTCG ACTACTTCTT CGTCAAGGAC CTCAACAAGG AGCAGCGGCT 
    CGAGCTCCAG ACCTCCAGCC TCGACGCCGT CCTCTGCACC GTCAGCGTCC 
    AGTACCTTCA GTCCCCTGAG AAAGTTTTCG CGGAGATCTT CCGGGTGCTG 
    AAGCCGGGGG GAGTGTGCAT CGTGAGCTTC AGCAACCGGA TGTTCTACGA 
    GAAGGCGATC GGGGCGTGGC GGGAGGGCAC GGCCTACAGC CGCGTGCAGC 
    TCGTGACGCA GTACTTCCAG TGCGTCGACG GGTTCACGGA GCCGGAGGTG 
    GTGAGGAAGC TGCCCTCCGA CGCCGCCGGC GGGAAGCCGG CGTCGCCGCT 
    GGACGCCGTG ATGAGGCTGT TCGGGATGGC GGGCTCGTCC GACCCGTTTT 
    ACGCGGTCAT CTCGTACAGA AACTTCAAGC CCATGTGAAG TTTTTACATG 
    TAGGTGCCAG AGCCAACTTA CTGCTAAAAC TCATGGAAAT CTTGAGATGT 
    ACATCTAGTA TTATAATTAG GGATGTACTT CCTCCGTTTC AAAATATTTG 
    ACACTGTTGA CTTTTT

    Gene models with high sequence identity

    1. AT3G01660.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 4e-86; Score: 315.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 3.6e-16
    HMMPfam Methyltransferase type 11 5.6e-10
    Gene3D no description 7.3e-07
    HMMPanther S-ADENOSYL-L- METHIONINE-DEPENDENT METHYLTRAN 1.7e-06
    HMMPanther METHYLTRANSFERASE 1.7e-06

    See the detailed result >

    AT3G01660.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G29590.1); Has 1347 Blast hits to 1347 proteins in 403 species: Archae - 26; Bacteria - 759; Metazoa - 25; Fungi - 12; Plants - 94; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR