K37831

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37831

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37831

Determination of introduced cDNA(s)

  • J013039J02 - Rice Full-length cDNAs - Original: J013039J02

    full reading [+] show sequence

    Nucleotide sequence: J013039J02 - full reading 
    GGAAGGGCCC CCCTTCCTCC TCTCCTCTCA CCACACACCA CCCGAAAAAC 
    ACCGGAGGAA TATTCCCCAC CTCGCCTCTC TCCAGCCACC GACATGGCCG 
    CCGCCGCCGC CGCCGCCGCT TCCGCCTCCT CCTCGTCGTC GTCCTCCTCC 
    TCGGCCGAAT CCGTCCCCCT CCCCACCACG ACTCTCCCCA TCGACAAGGC 
    GGCGGCTGTA GGCGGCGGTG GCGACCGGGC GGTGGATTGC GGGGTGTGCG 
    CGATTTGCCT GGATAAGATC GCCCTGCAGG AGACGGCCCT CGTCAAGGGA 
    TGCGACCACG CCTACTGTGT GACGTGCATT CTGAGGTGGG CGTCCTACAA 
    ACAGACGCCT CAATGCCCAC AGTGCAAACA TCCGTTTGAT TTCCTCAGCG 
    TGCACCGCTC TCTCGATGGC TGTATTCATG ACTACATGTT CGAGGAAAGC 
    GTTTGCCTTC TCCTGAGGGC CACTTGGTTT GAACCTCTGA TCGTAGAGGC 
    TCACGAAGAG GCTCTGGATG AAGAAGAGTT ATACCACATC TATCAATATG 
    ATGATGGCGT TGAAGATGAC CTTGACGAGG AAGCTTATTA CATGAGCAGG 
    TCTCCGAGCA TTCGAATTGG CAACAGGAGG TGGGGTGACA ATGGATATGT 
    CAGAGGAGGC AGGAAAGAGG CAAGGCCAGT GAGTCGCCAG TCCTTGAATG 
    ACACTGATGC TGGTCCATCC AGGACTCCCA AGAAGAAAGA TGTATCAGCA 
    TCGGGATCAG GTTCTGTGTC TAAGGAAGTT GCAGGAAGAC GAGCAAAACG 
    AGCTCTGAAG CGTGAAGCTG CTGATAAGGC AGCTGCAGAA AAGCACTTGA 
    AGCACCTCCA GAGGTTGGGC CTCAGGAAGG CACCCGAAGC AACAGCTGAA 
    GCAACTCCAG AGGTTGAACC TCAGCTGAAC GAGTGATTTT CACCAACTTC 
    TGTAGATAAT GGTGCTGTGA AGAAAACTGC AGCCCTTGGG TCACCCGAAT 
    AATCTTCCAT TGTGAAGGAC TGGAGCGTGG CCTTGTATCG TTGGCAAACT 
    TGCCGATTTG TACAGTACTT TAGTTTCACA AATTACTCGT AGCATTGAAC 
    TGCACATCAG TCTGCACCAG ATGCGGCGAT GCAATGCGGT TTACCTCAAT 
    CTGATAATAC TTTCAGTTAC CGGGATTCCT CTGCATGATG CAGAGGACCC 
    TGAACTAGGA GAATGTCAGT TGCTAGCTCT GCTAGTATTC TGTGCTGCAA 
    TGTATCAGTT TAGATAGAAT GTTGCATGTG ACTATCCTCC GATAAATGAA 
    ATGAGGAAAC TGGTCTTCTT GCATGTATTG TGTGACTATC AGTTCAATGA 
    ATCTTCTAAC CAGCGTTATC TATC

    Gene models with high sequence identity

    1. AT5G12310.1 [+] show detail - RING/U-box superfamily protein
      E-value: 8e-51; Score: 198.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 3.7e-06
    Gene3D no description 7.6e-07
    HMMPanther gb def: Hypothetical protein At2g28920 3.7e-06
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 3.7e-06
    superfamily RING/U-box 1.4e-11
    HMMPfam Zinc finger, C3HC4 RING-type 3.2e-07
    ProfileScan Zinc finger, RING-type 12.489
    Coil coiled-coil 0
    PatternScan Zinc finger, RING-type, conserved site 0

    See the detailed result >

    AT5G12310.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G19430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR