K37833

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37833

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37833

Determination of introduced cDNA(s)

  • J013111D24 - Rice Full-length cDNAs - Original: J013111D24

    full reading [+] show sequence

    Nucleotide sequence: J013111D24 - full reading
    GACCTGACAC GCCTGCCATG CCTCCCGCCC TCACCTCCAA CCCCCCCTCC 
    TTCCGCCCCC TCTCCACCCC TCTAACCCGC CGCCGTGCCG CCACAACCTT
    CCTCTGCCGT GTCGGCCCTG GCAAGCCTTC CAAGGACACC GGCGCGGATG
    ACGAGCCGAA GAAGAGGTCG TTCTTCGCCG ATTTCGGTAA GCTCTCGGAT
    GGAAGGTCGC TGATACCGGC CTTCCCGCCG GCCGCGGCTG GGTCTCTGTT
    CGCCGGCGGG AGGGGGAGGA AGGACCCGCA GACAGTGTTC GTCGCGGGCG
    CCACGGGGCA GGCGGGAGTT CGCATCGCGC AGACGCTGCT GCGGCAGGGG
    TTCGCCGTGC GCGCCGGGGT GCCGGACCTC GCGTCCGCCC AGGAGCTGGC
    GCGGCTCGCC TCCGCGTACC GGCTCATTTC CCCCACCGAG GCGCGCCGAC
    TCAACGCGGT GGAGTCCGAT TTCGAGGACC CCGAGGCGAT CGCCAAGTCC
    ATCGGCCCTG CAACTAAGGT GGTGGTTACA GTCGGCGCAG CTGAGAAGGG
    GCCCGACGGC GGTGTGGTCA CCACCGACGA GGCGCTCCGA GTTGTGCAGG
    CTGCTGACCT TGCCGGCGTG ACACACGTTG TGGTGGTGTA CGACCTGGGG
    GCCGGTGACC CCAGTGGTGA GTCGACGTAC AATGTGCTCG ACGGGTTCAC
    GTCCTTCTTC TCGAACCTCT TCTCCCGTGT GCAGTCCTTG CCACTAAACG
    AGTTCTTGGC TAAGGTGGTG GAGACCGACG TCAGGTACAC TCTCATCAAG
    ACGTCACTCA CAGATGACTA CAGCCCTGAG AGCACCTATG GCTTGGTCCT
    GGCCAAAGAG GGCGCGTCCA GCACTACTTC CTCAACAGAA ACCGGCAAGG
    TGTCCAAGTT GCAGATTGCT GGTCTTGTGG CAGATGTCTT CTCCAACGTG
    GCAGTCGCGG AGAACAAGGT TGTCCAAGTT TCCACTAGCT CATCAGTAAC
    ATCCAAGACC ATAGAGGAGG CTTTCTCAGC TATCCCTGAG GACAGTAGAA
    GGAAGGAGTA CCAAGATGCT GTTGCAAAAG CACAGGCAGA AGAGGAGACT
    CGGGCTTCGC AGCGAACTCG TCAGGCAGAA GAGGACACTA CTACGGTCAA
    AGCCGGGGGG AAGAAGACGC CCTCTGATGA GGCAGCTGCA AGTGAGGCGC
    AAGCTTCTCT GGAGAACCTT CTGAGCAGAG CCAAAGGGTT CGGCACGGAC
    TTCTCATGGG AGAAGCTCAG CACACAACTT GCAGGAGTGG CCACTCAGGA
    CTCAGACGAG GTGGAACCAA AAGCAAAGAA GCTGGCACCA CAGAGAGCTG
    TTGTGAAGCC CGCGGCGCAG AAGACAAGAC CAACACCAAA GCAGCCGGAA
    TCCAAGCCGG ATGTGAGGCC CGTGTTTGGG GGACTCTTCA AGCAAGAAAC
    AATCTTTGTG GATGAGGACT GAGCTAATGC AGACTCTGCC ATTTTTCTTA
    ATCTTTTGTA TGCTATATCT ATGAAGCTCT TGGTGTATTC TTGGAAAGTG
    AATGAGTGAC AGTTGTATAA AATTGGCTGC AAAACCGTAT AACATTCTCT
    GCAGGTGAGA ATTGTTCGC

    Gene models with high sequence identity

    1. AT3G46780.1 [+] show detail - plastid transcriptionally active 16
      E-value: 4e-101; Score: 365.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 0.0000000000012
    Gene3D NAD(P)-binding domain 0.0000000000000055
    HMMPfam NmrA 0.0000084
    Coil coiled-coil 0

    See the detailed result >

    AT3G46780.1

    Model type
    Protein coding
    Short Description
    plastid transcriptionally active 16
    Computational Description
    plastid transcriptionally active 16 (PTAC16); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G18890.1); Has 1243 Blast hits to 1093 proteins in 359 species: Archae - 5; Bacteria - 555; Metazoa - 73; Fungi - 75; Plants - 168; Viruses - 22; Other Eukaryotes - 345 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR