K37836

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37836

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37836

Determination of introduced cDNA(s)

  • J033150M21 - Rice Full-length cDNAs - Original: J033150M21

    full reading [+] show sequence

    Nucleotide sequence: J033150M21 - full reading 
    GTGTGTGCAT TTCTACAATC TTTTGTTGCC CATTCATCTG GGTTTTCTTC 
    TGCTTCTTTT TTTTTCCTAG AGAGTACGGT TTTCTTTGTA ATTCTTTAAT 
    TTGTTGCAAC CATGAATGTA TTGGCATCTA AGATCTTCCC TTCCCGCTCC 
    AATGTTGCCA GCGAGCAACA ACAATCGAAG CGCGAGAAAG CAACTATTGA 
    TGACGCTAAG AACTCGTCCA AGAACAAAAA TCTTGACCGC AGTGTCGATG 
    AGAGTGTGCT TGGAATCATT CTTGGAGGTG GTGCAGGGAC TAGATTGTAT 
    CCCCTCACCA AGAAGCGTGC CAAGCCTGCC GTGCCTCTGG GTGCCAACTA 
    CAGGCTTATT GATATCCCTG TCAGCAACTG TTTGAACAGC AACATATCCA 
    AGATCTATGT GCTGACACAA TTCAACTCTG CCTCTCTGAA CCGTCACCTG 
    TCAAGAGCCT ATGGGAACAA CATTGGCGGG TACAAGAATG AAGGGTTCGT 
    TGAAGTCCTC GCTGCACAGC AGAGCCCAGA TAATCCTAAC TGGTTTCAGG 
    GTACTGCAGA TGCTGTAAGA CAGTACTTAT GGCTATTTGA GGAGCATAAT 
    GTTATGGAGT TTCTAATTCT GGCTGGAGAT CACCTTTACC GCATGGACTA 
    TGAAAAGTTC ATTCAGGCAC ACAGAGAAAC AGATTCTGAT ATTACTGTTG 
    CTGCCCTGCC AATGGATGAG AAACGTGCAA CTGCATTCGG CCTCATGAAA 
    ATTGACGAGG AAGGGAGAAT AGTTGAATTT GCAGAGAAAC CAAAAGGAGA 
    ACAATTGAAA GCAATGATGG TTGACACTAC CATACTTGGC CTTGACGACG 
    TGAGGGCAAA AGAAATGCCT TATATTGCTA GCATGGGTAT CTATGTGATT 
    AGTAAAAATG TAATGCTTCA GCTCCTCCGT GAACAATTTC CTGGAGCTAA 
    TGACTTTGGA AGTGAAGTCA TTCCAGGTGC AACAAACATC GGAATGAGGG 
    TACAAGCTTA CTTGTATGAT GGTTACTGGG AAGACATTGG TACCATTGAG 
    GCATTCTATA ATGCAAATCT GGGAATAACG AAAAAGCCTG TACCAGATTT 
    CAGTTTCTAT GACCGGTCTG CTCCAATTTA TACACAACCT CGACACTTGC 
    CTCCTTCGAA GGTTCTTGAT GCTGATGTGA CAGACAGTGT CATTGGTGAA 
    GGTTGTGTTA TTAAAAACTG TAAGATACAC CATTCAGTAG TTGGACTCCG 
    GTCCTGCATT TCTGAAGGCG CAATAATAGA GGACTCATTA CTCATGGGAG 
    CTGACTACTA CGAGACTGAA GCAGACAAGA AACTCCTTGG TGAAAAAGGT 
    GGCATTCCCA TTGGTATTGG GAAGAATTGC CACATTAGAA GGGCAATCAT 
    CGACAAGAAT GCTCGTATTG GAGATAATGT GAAGATAATC AATGTTGACA 
    ATGTCCAAGA AGCTGCAAGA GAGACTGATG GATACTTTAT CAAAAGTGGC 
    ATTGTTACCG TGATCAAGGA TGCTTTGCTC CCTAGCGGAA CAGTTATATG 
    AAGTAGCTGC GTAATATGTG ATGGGGCATC GGCGACGAGC ACCAGGCGGG 
    CATTATAAGA AGAATAAAAG CAGTTCAAGG CACTTTATTC CCTTTTTTTT 
    TCTTCTGTTC TTCCTCTATT GTGTTAGGAT AAATGTAATG GTAGAAGCAA 
    CTGTTTTTCA GATGTTTTGG GAGTGAATGA TACCGTGCTT GAATTTTCC

    Gene models with high sequence identity

    1. AT5G48300.1 [+] show detail - ADP glucose pyrophosphorylase 1
      E-value: 0; Score: 784.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Glucose-1-phosphate adenylyltransferase 2.1e-209
    PatternScan ADP-glucose pyrophosphorylase, conserved site 0
    PatternScan ADP-glucose pyrophosphorylase, conserved site 0
    PatternScan ADP-glucose pyrophosphorylase, conserved site 0
    HMMPfam Nucleotidyl transferase 1.6e-73
    Gene3D no description 1.3e-51
    HMMPanther GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 4.9e-213
    HMMPanther SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 4.9e-213
    superfamily Nucleotide-diphospho-sugar transferases 9.4e-62

    See the detailed result >

    AT5G48300.1

    Model type
    Protein coding
    Short Description
    ADP glucose pyrophosphorylase 1
    Curator Summary
    Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.
    Computational Description
    ADP glucose pyrophosphorylase 1 (ADG1); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: photoperiodism, flowering, starch biosynthetic process; LOCATED IN: heterotetrameric ADPG pyrophosphorylase complex, apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase large subunit 1 (TAIR:AT5G19220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR