K37840

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37840

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37840

Determination of introduced cDNA(s)

  • J013124O04 - Rice Full-length cDNAs - Original: J013124O04

    full reading [+] show sequence

    Nucleotide sequence: J013124O04 - full reading 
    GGAGGGTTGG CGACGCCGCG GGCGGCGCGC GAAGCAAATG GAGCGCGATT 
    TTGGCGGATA AATTTGGGCG CGCGGAGGCG GGAGGAGCGG GAACCAAATC 
    GCGGAGCCGC TTCCAACCTC AGGTCTCACC CCAAACTCGC CGCCGCCGCC 
    GCCGCCGCCA TGGAGAGGAA GCAGGCGGAG TACAGCAACC TCGACGAGAG 
    GTACGCGATC CAGGGGGAGA AGTACCAGGG GCAGCAGTAC AGCCACATCT 
    ACTTCACGCG ACTCCACCAC ATGCGCAACC TCCTCCACGC CCTCGTCCCC 
    TCCTGGAAGC CGCACCTTCC TGTTACTACA GTGTTGGGAC TTGAAGAAGG 
    AAAGGATTGC ATAATCGTTG GAACTTTATA TAAGCACATG AAATTAAAGC 
    CTTCCATTCT TGATGAATAT TCTAAGGAGA GGTCTGCTAT TCCTCTTGTT 
    AAACCACACA ATTTCATGCA TCCTGATGAT CATCTCATTC TGGAAGATGA 
    AAGTGGGAGA GTTACACTTG CAGGAGCCAT ACCTCCAGCA GCATATGTTA 
    CTGGAGTTGT AATAGCTTTA CATGGGAAAG AAACAAGTGC TGGCAACTTT 
    CTTGTTGAAG ATATTCTTGA GGCTGGGATT CCTCCTCAAA TTACGTTACC 
    TAGCATAAAC GAGGACAAAT ATGTGGTATT TGTGTCGGGA TTAAGTATTG 
    GGAGTGAAAA ATTCAATCCT CTGCAATTCC AACTTCTTAT AGACCATATC 
    ACAGGGCATT TGGGTGATGA GAATGAGCAA TCCATAGCAT CCAACATAGT 
    ACGTGTTGTG GTGGCTGGGA ATTCGGTACA TATTTCTCCA AGATTCTTCA 
    ATGGTCAGGC AGTAGCATCG AAAGATCAAT CCAGGATAGC TGAACCAATC 
    AAAGAATTGG ATATAATGCT CACTCAGCTT GTGGCATCAT TGCCTGTGGA 
    CATGATGCCT GGATCTAATG ACCCAGCAAA TTTTTCTTTG CCTCAACAGC 
    CTTTGCATAG ATGCCTTTTT GCTGGAGCAG CCACTTATAA CACTTTTTCA 
    TCGTGCTCGA ATCCACATCA ATTCGAGCTT GATAGTGTCC GGTTTATTGG 
    AACATCTGGA CAGAACATAG ATGACCTCTA CAAGTACTCT GATGCCAAAG 
    ACAAGCTGGA ATTCGTGGAA AGAACACTGC GGTGGCGTCA TCTTGCTCCA 
    ACTGCTCCAA ACAGTCTAGG ATGTTATCCA TACACAGACA AGGATCCTTT 
    TCTCGTTGAA AGCTGTCCCC ATGTTTACTT CGTCGGGAAT CAAGATAAAT 
    ATGAAACTCA ATTATTGCAA GGGCTAGAAA AACAAAAAGT GAGGCTGATC 
    TGCATTCCAA GATTTTGTGA TAGTGGAGTT GCTGTCATGC TCAATTTGAG 
    GAACTTGGAG TGCAGCACGT TGAGTTTCTC AACAAGCTTC GATGCTTGAC 
    CATGCTCTAC TTGTCTGGAG TGCAAGTGAG TTGATGTAGC ATGCTGCTGT 
    GGACATCTTA ATCCTGAACT GGCGCAGGGT TGTCTAAAGG ATGTACTTGT 
    AGTTCTTTTT TTAGATTGTG ATGACCTAGG TTTCTCCAAT TAGATGTGTT 
    GATATAATTG CCTAAACCTC GATGTATCAA AAGCTGAAAT AGAGGGTGCA 
    CGGTTTGTAC TAAACAAAAA GAAGCGTATG CTTCTTTTCT CGGTATGAGT 
    ATCCACAGCT GATTTATTCG TCAGATGTTG TATTCTTTCT CATCAGTCTT 
    AGAAAATGTA TATTTCGGAT CAGATATGCA GATGCAAAAT TGCACAGCAG 
    ACAGCAGAGT AAATTAGATT ACTGCTAGTC TCTAGAAGTT TAGCTTGAGT 
    TAGATGTCTT CCCCAGGTTG CAGAAGATGG AGTTGTTGTT CAACATGAAC 
    GGGAAGAGTT AAGAGTATTT TTCCCCTAAT TCCAGACTCT AAGAATTGAT 
    ATATTTGGTG TGGTTCGACT TACCCTTATT TTGGCG

    Gene models with high sequence identity

    1. AT2G42120.2 [+] show detail - DNA polymerase delta small subunit
      E-value: 0; Score: 655.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther DNA POLYMERASE DELTA SMALL SUBUNIT 1.5e-94
    Coil coiled-coil 0
    HMMPfam DNA polymerase alpha/epsilon, subunit B 6.2e-49

    See the detailed result >

    AT2G42120.2

    Model type
    Protein coding
    Short Description
    DNA polymerase delta small subunit
    Computational Description
    DNA polymerase delta small subunit (POLD2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR