K37903

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37903

Determination of introduced cDNA(s)

J023012H08 - Rice Full-length cDNAs - Original: J023012H08

full reading [+] show sequence

GGAAAGAAAG AAAGAGAAAA AAAAAAAATC CCCCCAAATC CCAAGGCCTC 
CCTCTCCTCT CTCTCTCTCG CTCTCCCCTC CCCGCGCGTC GCTTTCGCCG 
GACACCACCG CCCCCCGCCG CTTTCCCCTC CTCTCCTCTC CTCGCGTCGC 
CTCCTTCCTT CCCTTTTTGA CCCCCCCAAT TCCCAACTGG GAATCCCCCC 
TCGGACGGCG GCGGAAGCGG AAGCAGCAGA GGAGAGCATC TGGTTCCCCT 
GCGCTGCCCG CTTTTTGGTG GTGGTGGCGG CGGCCGGCGG CGGATCGCTG 
CCTCGCCGTG CCGGTAAGCA TTCTCATGAT GTACCATGCA AAGAAGTTCT 
CTGTACCCTT TGGACCGCAG AGTACACAGA GTAACGAGCA TATGAGTAAT 
ATTGGAGCTT TTGGCGGGTC AAACATGGGC AGCCCTGCTA ATCCTGCAGG 
GAGTGGGAAA CAACGGCTAC GTTGGACCTC AGATCTCCAT AACCGCTTTG 
TGGATGCTAT TGCTCAGCTT GGTGGACCTG ATAGAGCAAC ACCTAAAGGG 
GTTCTCACTG TAATGGGTGT TCCTGGGATC ACAATTTATC ATGTGAAGAG 
CCATTTGCAG AAATATCGCC TTGCAAAGTA CATACCAGAA TCTCCTGCTG 
AAGGCTCAAA AGACGAAAAG AAGGATTCTA GCGATTCCCT CTCTAACACA 
GATTCTGCAC CAGGAATGCA AATCAATGAA GCTTTGAAGA TGCAAATGGA 
GGTCCAGAAG CGACTCCATG AACAACTTGA GGTGCAAAGG CAGCTGCAGC 
TGAGAATTGA AGCACAAGGG AAGTACTTGC AGATGATCAT AGAGGAGCAG 
CAAAAGCTCG GTGGATCACT CAAAGCTTGT GAGGAGCAGA AGCTACCGCA 
TTCACCACCA AGCTTAGATG ACTACCCAGA TAGCATGCAG CCATCTCCAA 
AGAAACCCAA GATGGACAAC CTGTCACCTG ATTCGGTACG GGATGTGACA 
CAGTCAGATT TTGAATCCCA TTTGATTGGT CCTTGGGATC AAGAGGCTGC 
ATTCCGAGTG GATGAATTTA AAGCTGACCC TGGTCTGAAC AAATCATAAA 
GCAAAACCTC ACTCATCGGA AATTCTTGAT CCAAGATGTT AACCTCCACT 
GCGGGCCGAT CGCATGTGAA TATATATCCT CTTAACAACA GAGCGAGCCT 
TGTAAGGATC TTTGGATCCA CATCTGATTC CTTCACCACG GCCAGGTGTT 
GTCGTCACTG TAGTATTCAT CATCATCATA CAGCTCTTGT AATTATCAGG 
ATGTCCTAAA AGCCCTAGCA AGCAATTTTC CTTCTTTTGA AGGGAAATTG 
CCCTGAGTTG AATCATGTAG CCAGAAAGAG TACACATTTA CACGCAATAC 
ATTTGCTGTG AAGAGGGTGT GCCTCCCTGA AGTTATATGT GAATGATTTG 
TGTTAGATTC ATAGTTAGAA TTTGGCCTTC TCTCTTCTAC TGCTAAGTGC 
TGCTCAGAAT CAAGAAAAAG GAGTAATGAT TAAAATGAAG GGTTAGGTTC 
TAGCTTTTGT TTTGACGTTT GACAAAGTAA GGTCTGGTTT GGTTTACGAT 
CAATGTAAAA CCTTACCAAA ACATTTGTAT GCTAAATCGG GGTACTGACA 
AAATTTTGGC GAAGTCAGTT ATTGGTTTGC TGCCAACATT TTTCTAGGCT 
GTCTGGTTAT AGTTTGGTTT GAAGACAACT GAAGTTCCAA GTCCCAACCA 
TATGCTCTGC AAAAATTTAG CAATGTATGA GTTGTCACTA CTAAAATTTA 
GTACAGCAAA TTAAATGGTA GTC

Gene models with high sequence identity

AT2G01060.1 [+] show detail - myb-like HTH transcriptional regulator family protein
E-value: 6e-44; Score: 176.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
superfamily	Homeodomain-like	2.6e-16
ProfileScan	HTH transcriptional regulator, Myb-type, DNA-binding	10.742
HMMTigr	Myb-like DNA-binding domain, SHAQKYF class	3e-32
Gene3D	Homeodomain-related	7.9e-20
HMMPfam	Myb, DNA-binding	0.000000000000049

See the detailed result >

AT2G01060.1

Model type: Protein coding
Short Description: myb-like HTH transcriptional regulator family protein
Computational Description: myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link: InterPro Scan - TAIR