K37918

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37918

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37918

Determination of introduced cDNA(s)

  • J013072E14 - Rice Full-length cDNAs - Original: J013072E14

    full reading [+] show sequence

    Nucleotide sequence: J013072E14 - full reading 
    GAGGGAAACC CGAATCAAAC TCGCGCGCCG CGAAGCAGCA GCCGCAGCAA 
    TGGCGGGCGT CGCCGCCCTC TTCGCCTCCC CGGCCTTCCC CTTCCCATCC 
    ACCTCCTCCG TCTCCTCCTG CTCCTGCCGC TTCCGCCCCG CCGTCGCCCG 
    CGCCCCGCGC CACCAGCCTC CCGGCCGCCG CGTGACCCGG CGCTTCGACG 
    AGGTGGAGGG GGTGTCGAAG AGGCGGCGGG GCATTGGCGG CGGCGGCGGA 
    GGGGGCTCGC AGGCGTCGTC GTCGTCGTCG CGTAAGGACA GAGGGCTCGC 
    CGTTGACTTC AAGGAGTCGC AGGTCTCAGA TTTCGAGGAC CTTGAAGAGG 
    ACAAATTCCT TAATGCTGTA GTTAAGGTCT ATTGCACTCA TATTGCACCT 
    GATTATGGGC TTCCTTGGCA GAAGCAAAGG CAACATGCAA GCACAGGGAG 
    TGCCTTTATG ATTGGTGATG GCAAACTATT GACAAATGCA CATTGTGTTG 
    AGCATGACAC CCAGGTCAAA GTAAAGAGAA GGGGAGATGA CAAAAAATAT 
    ATTGCCAAGG TTCTAGCAAG GGGTATTGAG TGTGACCTTG CATTGCTGTC 
    TGTTGAGAAT GAGGAATTCT GGCGAGGAAC AGAGCCACTT CAACTGGGTC 
    GCTTGCCGTG CCTTCAGGAT TCAGTAACTG TTGTGGGATA TCCTCTTGGT 
    GGAGACACGA TATCTGTAAC AAAAGGTGTT GTTTCACGCA TCGAGGTCAC 
    TCCATATGCA CATGGAACTT CAGATCTTCT TGGCATTCAA ATCGATGCAG 
    CAATAAATCC TGGAAACAGT GGTGGACCAG CCTTTAATGA CCATGGGGAA 
    TGCATCGGTG TGGCATTTCA GGTCAGATGA AGCTGAAAAT ATTGGATATG 
    TAATTCCAAC TACAGTTGTA TCCCATTTCT TGAACGACTA TCAGAAGAAT 
    GGAAAATATA CAGGATTTCC TTGCCTGGGT GTTCTCCTTC AAAAATTGGA 
    AAACCCTGCG TTGCGTGAAA GCTTAAAAGT ACCTTCAAGT GAGGGTGTTC 
    TTGTCCGCCG GGTTGAGCCT ACTGCTCCTG CAAGCAAAGT TTTGCGGAAG 
    GGAGATGTGA TAACAAGTTT TGATGGCGTC GCGGTTGGAT GTGAGGGAAC 
    TGTACCATTC CGCTCCACAG AGCGAATTGC TTTCCGCTAC CTCACAAGCC 
    AAAAGTATGC AGGTGATGTT GCCCAACTAG GTATCATTCG GGCAGGCAAC 
    ACCATGAAAG TACAGACCGT TTTGCAGCCA AGAAAACATT TAGTGCCGTT 
    CCATGTTGAA GGAGGGCAGC CTTCCTATCT GATAGTTGCT GGCCTTGTCT 
    TCACACCTTT GACAGAACCA TTTATAGAGG AGGAGTGCGA AGAAACTCTA 
    GGGTTGAAAT TGCTGGCAAA GGCACGCTAT TCTCTATCAA CATTTGAAGG 
    GGAGCAAATC GTTATTGTAT CACAGGTTTT GGCACACGAG GTTAACATTG 
    GCTATGAACA CATGGGCAAT CAACAAGTCA TTAAGCTAAA TGGAACCGTG 
    GTAAAGAATA TTCACCATCT TGCCCACCTT GTTGACAACT GCAAAGACAA 
    GTTCTTGACG TTCGAATTCG AAGACGACTT CCTAGTTGTT TTGGATCGGG 
    AAGAAGCGAC TACCGCATCA TCAGATATCC TAAAGGAACA TGCAATTCCC 
    TCTGTAAGGT CATCTGATCT ATCAGAGCCA TATGTCGACA CAGAGCAAGA 
    AATCCAAAAA CCAAACGATG ATTTTGGTGA CAGCCCTGTC ACAAACTATG 
    AAATGGGAGT TGACTGTCTC CTCTGGGCAT GAACAGCCAA GGATGGAATT 
    TGAATTTCAG TTCAAACAGT GACAATGCCG GTGAATTTCA TGCATCTGGA 
    TGGCAGGAAA GAGCATTTCC CCACCATGTT GAAATCCACT CCATAGAGGC 
    GAAGCCGGAG TCATGTTTGT TAGTGTAGGA AGTTCAGAGT TATGTTGTAC 
    CTTAGAAAAC CACACAAATG CTTGATTCAT CATCAATTTT TTTAGGGGAT 
    GGGACTATGG GACTGTGGGA GATTGGGGGA GGGCTGTAGA ATTTGGCAGG 
    GTGTAATCCT GTAATTTTTT GGGCATGCAA TAAATCGTCC AGAAATTTTG 
    TTGCTTT

    Gene models with high sequence identity

    1. AT2G47940.1 [+] show detail - DEGP protease 2
      E-value: 0; Score: 328.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan PDZ/DHR/GLGF 9.149
    HMMPfam Peptidase S1/S6, chymotrypsin/Hap 8e-17
    HMMPanther Serine endopeptidase DegP2 9e-89
    HMMPanther SERINE PROTEASE FAMILY S1C HTRA-RELATED 9e-89
    HMMPanther Serine endopeptidase DegP2 1.5e-106
    HMMPanther SERINE PROTEASE FAMILY S1C HTRA-RELATED 1.5e-106
    Gene3D no description 6.7e-08
    Gene3D no description 4.6e-11
    Gene3D no description 7.6e-07
    FPrintScan Peptidase S1C, HrtA/DegP2/Q/S 3.4e-12
    FPrintScan Peptidase S1C, HrtA/DegP2/Q/S 3.4e-12
    FPrintScan Peptidase S1C, HrtA/DegP2/Q/S 3.4e-12
    FPrintScan Peptidase S1C, HrtA/DegP2/Q/S 3.4e-12
    FPrintScan Peptidase S1C, HrtA/DegP2/Q/S 3.4e-12
    superfamily Serine/cysteine peptidase, trypsin-like 2.6e-36
    superfamily PDZ/DHR/GLGF 2.4e-08

    See the detailed result >

    AT2G47940.1

    Model type
    Protein coding
    Short Description
    DEGP protease 2
    Curator Summary
    Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.
    Computational Description
    DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 15046 Blast hits to 15035 proteins in 2533 species: Archae - 101; Bacteria - 10614; Metazoa - 317; Fungi - 14; Plants - 376; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR