K37921

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37921

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37921

Determination of introduced cDNA(s)

  • J013107K09 - Rice Full-length cDNAs - Original: J013107K09

    full reading [+] show sequence

    Nucleotide sequence: J013107K09 - full reading 
    GGTTGTGCAC AGCTCTTGTT CTCCATTAAT CCAGCCGTGC GTGCAGTTGA 
    GGTCCACCTG CTGCTGCTCT CTGTCTGCTC CCATCGAACA AATCAAGAAC 
    CACCCTCTCC ACTCTCCAAT CCAATCTCGA ATAGGAAGAA GGATGCTTGG 
    TTTTGCGCCG GCACCAGGCC GGCCGCTCTT CGTGCTCTTC GGTTCCTCCA 
    TCGTCCAGTT CAGCTTCAGC AATGGCGGAT GGGGCGCTGC CCTTGCAGAC 
    ATCTACGCTC GCAAGGCTGA TATCCTTCTC AGAGGGTATA TTGGTTGGAA 
    CTCAAGGCGC GCCCTTCAAG TCATTGACAA AATTTTTCCC AAGGATTCGC 
    CCGTGCAACC TTCTTTGGTA ATAGTTTACT TTGGTGGCAA TGATTCGGTT 
    GCTGCCCATT CATCCGGCCT TGGACCTCAT GTGCCACTAG AGGAGTACAT 
    AGACAACATG AGAAAGATCG CAGACCACCT GAAGAGCTTG TCTGAGAAGA 
    CCCGTGTCAT CTTCCTCAGC TGCCCACCAC TTAACGAGGA GACGCTCCGA 
    AAATCAACCA GCACTGTCCT GAGTGAGATA GTGCGGACAA ACGAAACTTG 
    CCGCCTATAC TCCGAAGCCT GTGTATCTCT ATGCAAAGAG ATGGACCTGA 
    AGGTGGTTGA TCTTTGGAAT GCTATGCAGA AACGGGACGA CTGGGCGACG 
    GCCTGCTTCA CGGATGGGCT TCATCTGTCT GAAGAAGGGA GCAAGATTGT 
    TGTGGAAGAG ATCCTGAGGA TCCTCAAGGA GGCAGAGTGG GATCCATGCC 
    TGCACTGGAA GGCGATGCCG ACAGAGTTTG GGGAGGACTC ACCCTATGAT 
    CTCGTCTCCT CCAGCGGCCA ATCCACCGTC AACCCCTCCG ACTGGACCTT 
    CCACAGGACT ATCCAATGGG ACTGACCTTC CATTCGTCTC AATCTCAGTA 
    TCTCATGATG GAGCATATAC ATGCATGCTC CAACGTGCAA CATTACATGC 
    ATGATTCATA ATTAAGATCC CCTTCGGTCT TACTATATAT GTAGGGGTCT 
    AATGCTAGCT GATGACGAGG GGTCATGGAT TAGGCTTCAG CTCGATCGAG 
    CTGAAAAAAA ATCAGATTTA GGATGATATT AACTGCTTTG CTCCCTGCCT 
    GCTATATATC ATAAGTGAGA CAATGCACAT GATTATCTCG CTATATACTA 
    TGTGACTCAT TTCGCT

    Gene models with high sequence identity

    1. AT3G11210.1 [+] show detail - SGNH hydrolase-type esterase superfamily protein
      E-value: 1e-104; Score: 376.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Gene3D Esterase, SGNH hydrolase-type, subgroup 2e-12
    HMMPfam Lipase, GDSL 5.2e-28
    superfamily Esterase, SGNH hydrolase-type 4.3e-37

    See the detailed result >

    AT3G11210.1

    Model type
    Protein coding
    Short Description
    SGNH hydrolase-type esterase superfamily protein
    Computational Description
    SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G38180.1); Has 768 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 304; Metazoa - 76; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR