K38007

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38007

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38007

Determination of introduced cDNA(s)

  • J023079C18 - Rice Full-length cDNAs - Original: J023079C18

    full reading [+] show sequence

    Nucleotide sequence: J023079C18 - full reading 
    TTTCTAATTA ATTATTTAAT ACTGTTAGGT GATCGACCCG GAGGAGGAGG 
    AGAGGTTCGA CTTCGACACG CTGGATGACA CCAAGACATG GCCGGAGGAC 
    GAGGTGCCGC TCCGGCCCGT GGGGCGCCTC GTTCTCAACC GCAACGTCGA 
    CAACTTCTTC AACGAGAACG AGCAGCTGGC GTTCGGGCCG GGGCTGGTGG 
    TGCCGGGGAT CTACTACTCC GACGACAAGA TGCTGCAGTG CAGGGTGTTC 
    GCGTACGCCG ACACGCAGCG CTACAGGCTG GGGCCAAACT ACCTGATGCT 
    GCCGGTGAAC GCGCCCAAGT GCGCCCACCA CAACAACCAC TACGACGGCG 
    CCATGAACTT CATGCACCGG GACGAGGAGG TGGACTACTT CCCATCGCGC 
    CACGCGCCGC TCCGCCACGC GCCGCCGACG CCCATCACGC CGCGCCCCGT 
    GGTGGGGAGG AGGCAGAAGG CGACGATACA CAAGCAGAAC GACTTCAAGC 
    AGCCCGGGGA GAGGTACAGG TCGTGGGCGC CGGATAGACA GGAGAGGTTC 
    ATCCGCCGCT TCGCCGGCGA GCTCGCGCAC CCCAAGGTCT CCCCTGAGCT 
    CCGCGCCATC TGGGTCAACT ACCTCTCCCA GTGTGATGAG TCGTTGGGGG 
    TGAAGATTGC GAATAGGCTC AACGTGAAGC CAAGCATGTG AAGAAACTAA 
    GGCACAAGAA TGCATCATCT CTTGTTAATT AATTGGAGTA CTACCAACCA 
    AATAAGGCCA GACAATGTCA GATGCACGCA TCTTCTGTTG TCGTTGGGCC 
    ATCTTTTGTA TGCATCCTAT TGTTAATTAC TAGTACATGA TATCCAAGTG 
    ATCATCAGCA AGGCTACAGA AATTCTGTAA TACGATAAAT TAAAAGAAAC 
    CAAAATGGAG CCTGCATATG TGTAACTTAA TTAATGTACT GGCGTATTAA 
    TGCCACTGCT GCATGTTGTA ATACTCC

    Gene models with high sequence identity

    1. AT1G20630.1 [+] show detail - catalase 1
      E-value: 9e-91; Score: 330.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Catalase-like domain, haem-dependent 7e-124
    PatternScan Catalase 0
    ProfileScan Catalase, N-terminal 26.59
    HMMPfam Catalase related subgroup 9.1e-56
    HMMPfam Catalase-related immune responsive 1.5e-20
    FPrintScan Catalase related subgroup 1.5e-26
    FPrintScan Catalase related subgroup 1.5e-26
    Gene3D Catalase, N-terminal 7.3e-74
    superfamily Catalase-like domain, haem-dependent 3e-75

    See the detailed result >

    AT1G20630.1

    Model type
    Protein coding
    Short Description
    catalase 1
    Curator Summary
    Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2.
    Computational Description
    catalase 1 (CAT1); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, cytosolic ribosome, cell wall, peroxisome, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1); Has 6108 Blast hits to 6088 proteins in 1842 species: Archae - 22; Bacteria - 4283; Metazoa - 677; Fungi - 546; Plants - 461; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR