K38027

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38027

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38027

Determination of introduced cDNA(s)

  • J023104P18 - Rice Full-length cDNAs - Original: J023104P18

    full reading [+] show sequence

    Nucleotide sequence: J023104P18 - full reading
    CCTCACTTCG CTCTCTCCTC TCCTCCGCAT CGCGATCACC TCCTCCTCTC 
    CTCTCCTCGC CTCGCCTCGC CGGAGATCGC CTCACCCACG CGCCGCCTCC
    CTCCCATGGA CGCATCCTAC CGCCGCGACG GCCGCGGAGG CGGCGGCGGC
    GGGGGCGGCG GCGGTTCCGC CCCTCGCTCC GTCGAGGACA TCTTCAAGGA
    CTTCCGCGCC CGCCGCACCG CCATCCTCCG CGCCCTCACC CACGACGTCG
    AGGATTTCTA CGCGCAGTGC GATCCAGAGA AGGAGAATCT GTGCCTGTAC
    GGGTACGCGA ACGAGGCGTG GCAGGTGGCG CTGCCGGCGG AGGAGGTGCC
    CACCGAGCTG CCGGAGCCGG CGCTCGGGAT CAACTTCGCC CGCGACGGGA
    TGAACCGCCG CGACTGGCTC GCGCTCGTCG CCGTCCACTC CGACTCGTGG
    CTCGTCTCCG TCGCCTTCTA CTACGCCGCG CGCCTCAACC GCAACGACCG
    GAAGCGTTTG TTTGGCATGA TGAATGATTT GCCAACTGTT TACGAAGTCG
    TATCTGGTTC AAGACAATCT AAGGAGAGGG ACAGATCCGG CATGGACAAC
    AGCAGCAGAA ATAAAATTTC ATCGAAGCAT ACCAGCGACG TGGCGCGTGT
    CGAAAATAAT ATCAAGGAGG AAGATGAAGG CTACGACGAG GACGATGGCG
    ACCACAGTGA GACCCTATGC GGGACTTGCG GTGGGATATA CAGCGCCGAC
    GAGTTCTGGA TCGGCTGCGA CGTGTGCGAG AGGTGGTACC ACGGCAAGTG
    CGTCAAGATC ACTCCGGCGA AGGCGGAGAG CATAAAGCAG TACAAGTGCC
    CGAGCTGCAG CTCCAAGAGA CCTAGACAGT AGTAGCATAT GCCACCCTCC
    TCCGGCGAGA GGAGGTGTCG CCGGCGACGC CGCCATTGAC AGAGGCGTCA
    GGCTGTGGGT TACTGTACCT TTCGTTTTTC GACTTACATA TGATGAAGAT
    GATGCCAAAT GTGAGGTAAG AAGATCACAA GACATTCATG TGAGGTGGAG
    ATATGAGGCT ATGTATGTTG CCAGAGGAAT AGGGGTAACG TAATATATGT
    AACTTTGCG

    Gene models with high sequence identity

    1. AT3G11200.1 [+] show detail - alfin-like 2
      E-value: 1e-82; Score: 303.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Zinc finger, FYVE/PHD-type 0.0000000000052
    Gene3D no description 0.000000000000001
    PatternScan Zinc finger, PHD-type, conserved site 0
    HMMSmart Zinc finger, PHD-type 0.00000000053
    ProfileScan Zinc finger, PHD-finger 9.348
    HMMPfam Protein of unknown function DUF3594 2.2e-77
    HMMPfam Zinc finger, PHD-finger 0.000000000082
    HMMPanther PHD/F-BOX CONTAINING PROTEIN 0.00000000014

    See the detailed result >

    AT3G11200.1

    Model type
    Protein coding
    Short Description
    alfin-like 2
    Curator Summary
    AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
    Computational Description
    alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR