K38037

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38037

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38037

Determination of introduced cDNA(s)

  • J033091B05 - Rice Full-length cDNAs - Original: J033091B05

    full reading [+] show sequence

    Nucleotide sequence: J033091B05 - full reading 
    GACTCTACTC TCCTACTAGT CGTCTACTAC TCGGCCAGGT GAGGTGCCCA 
    ACCACCGCCG TGGTAGCGAG CGCGCGACAT GGCGGCGGCG GAGGTGAGGC 
    ACCGGACGGT GGAGGTGGCA AGCGGGGTGC GCCTGCACGT GGCGGAGGCG 
    GGCCCGGAGG ACGGGCCCGC CGTGCTGCTC GTCCACGGCT TCCCGGAGCT 
    CTGGTACTCG TGGCGCCACC AGATGCGCGC CCTCGCCGCG CGGGGGTTCC 
    GCGCCGTGGC GCCCGACCTC CGCGGCTACG GCGACTCCGA CGCCCCGCCG 
    GGCCGGGACT CCTACACCGT GCTCCACCTC GTGGGCGACC TCGTCGCGCT 
    CATCGCCGAC GTCGGCCAGC CCCGGGTGTT CGTGGCGGCG CACGACTGGG 
    GCGCCGCCGT GGCGTGGCAA CTGTGCCTGC TCCGCCCCGA CCTCGTCACG 
    GCGTTCGTCG CCCTCAGCGT CGAGTACCAC CCGCGGAACC CCACGAGGAG 
    CCCCGTACAA ACCCTCAGGG CCGTGTGCGG GGACGGCCAC TACATCTGCT 
    TCTTCCAGAA ACCTGGAGTG GCCGAAGCTG AATTTGGTAG AGGTGATATA 
    AAGTGTCTCT TGAAGAAATT CTATGGAATG CGCAAGGCAG CACCTCTGAT 
    TATACCCCCA GGCAAGACTT TATTTGACTC AATTGATTCA GATGGTACTT 
    GCCCTGCATG GCTGTCAGAA GAAGACATTT CCTACTATGC CGAGAAATTT 
    GAGAAGACTG GATTTACTGG AGGATTGAAC TACTACAGAT GCATAGACTT 
    GAACTGGGAG CTGACTGCAC CATGGACTGG AGTTCCAATA AAAGTTCCGA 
    CAAAATTCAT CGTTGGAGAT CAGGACCTTA CGTACAACAT TCCAGGTGTA 
    AAAGATTACA TCCACAAGGG TGGTCTAAAG GCATGTGTGC CAAATCTCGA 
    AGATGTGGTT ATCATGGAGG GTGTTGCCCA TTTCATCAAC CAGGAGAAGC 
    CTGATGAGGT CTCCGACCAT ATTTGCGGGT TCTTTAGCAA GTTCTGATAT 
    GTGCAAAATC TCTTGGAGCC TGCTTGCTAA TTGTACTGTA AAAACTAGAA 
    CCATTATGCC AGTACTGATA TCTTCC

    Gene models with high sequence identity

    1. AT4G02340.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 5e-112; Score: 401.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Epoxide hydrolase-like 3.8e-41
    FPrintScan Epoxide hydrolase-like 3.8e-41
    FPrintScan Epoxide hydrolase-like 3.8e-41
    FPrintScan Epoxide hydrolase-like 3.8e-41
    FPrintScan Epoxide hydrolase-like 3.8e-41
    FPrintScan Epoxide hydrolase-like 3.8e-41
    HMMPfam Alpha/beta hydrolase fold-1 5.5e-12
    Gene3D no description 4.5e-61
    HMMPanther EPOXIDE HYDROLASE 1e-122
    HMMPanther ALPHA/BETA HYDROLASE RELATED 1e-122
    PatternScan Kringle, conserved site 0
    superfamily alpha/beta-Hydrolases 5.1e-66

    See the detailed result >

    AT4G02340.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: epoxide hydrolase activity, catalytic activity; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G05600.1); Has 22331 Blast hits to 22276 proteins in 1970 species: Archae - 173; Bacteria - 16575; Metazoa - 610; Fungi - 564; Plants - 630; Viruses - 11; Other Eukaryotes - 3768 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR