K38042

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38042

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38042

Determination of introduced cDNA(s)

  • J033067G24 - Rice Full-length cDNAs - Original: J033067G24

    full reading [+] show sequence

    Nucleotide sequence: J033067G24 - full reading 
    GGCTGCTGCT GAAAGCCTGA TGAAATTGGG TGATTAGGTG CTTAACATAA 
    TCCCAATCCT AGAAAAATAC ATTCGGAGTG GTTGCTGCTG AGCTCAACCA 
    ATCAAGCTTG TTGGGGAGGC AAGCAGTCAC AATGATGAGC TTCAACAAGA 
    GCCAAGAAGG ATTTGGGCAG GTTGCTGCTG TGGCCACCCT GGCCTCCAAT 
    GGAGGAGGCT CTCTACCATG GCTGCTGTAC GGCGAGCCAC TGGGGCAGGG 
    GAAGCCGGCC ATGTCGCCGG AGGGCGTGGT GCCGAGAGCA CAGACTCCTC 
    TGGATCCTCC TCAGGTTCCA GCCATGGACA GGGGTGTCCC TGAAATTCTG 
    AACTTCTCCA TGGTTCCAGG TAAAGGAGAA AAATGTTCTG AGCACTCAAC 
    TACTATTGCT CTGCAGTCAC CATTTGCAGA ATATAATGGC TGTTTTGAGC 
    TGGGCCTTGG TCAATCTGTG GTTCCCTCTA ATTATCCTTA TGCTGACCAG 
    CACTATGGCC TACTTTCTCC TTATGGAGTG AGACCAACGC CTAGCGGGCG 
    AATTCTTATT CCACCAAATA TGCCAGCTGA TGCACCAATT TATGTGAATG 
    CAAAACAGTG TTCAGCCATC ATTCGACGTC GCCATGCTCG TGCCAAGGCA 
    GAGAGGGAGA ATAGGCTGGT CAAAGCTAGA AAACCATATC TTCACGAATC 
    ACGCCATCTT CATGCAATGC GTCGTGCAAG AGGCTCTGGT GGGCGCTTCC 
    TCAACACGAA GAAAGAGACC AATGGGAAAA CCACTGGTGG AGGCAGGAAG 
    GTGATGGACA TCATCATCCC GCCTCTGTGC CCCGCCGCAT CTCCCAGCTC 
    GGAGCAGTGC AACCCAAGCA GCGTTTCCAG CCTGTCCGGG TCAGAGGTGT 
    CGAGCATATA TGAACACGAA GACATGGACC ACTTCCATAG CTTTGATCAT 
    CTCCGGACAC ACTTCTTCAC CCCGCTCCCG AGCCTCATGG ATGTCGAGCA 
    CGGGGCTGGT AACCCCTTCA AGTGGACAGC AGCCTCTGAT GGCTGCTGTG 
    ACCTCCTCAA AGCATGACTA GAGGGGGGAT ACACCGGGCA GCCGAAGCTG 
    GCAAACATCA GCAGTTTCTG CTGGATACAT TGCCCAGCTC CAGGTCAGGG 
    ATTGTCCCTG CTGGTATTGG CTGTCTGTAG GCAACTCATT CTTGGCTGAT 
    CGGTTCCGCT CATCGCCTAC TTGTCCCGGA AACTCCAGCA CCGGTTTCTG 
    GGATCCTGCG GTGATCAGAA CAACCCATCG CGTGTAAAAA AAAAAAAAAA 
    TCATCTATGC TATGCTGTTA CTGCTTGCTA CCATTATCTG AACTGCTACT 
    ACTAGGTAGC AAGCTTAATC TGGCAAGGTA AATAAAGTCT GGAACTTTGA 
    ACTGGTTCCA GTGGTGATGA TTGTGGTGTG CTTGTATCCT GATAACTATT 
    GTGAGTTTGA GACCTGGCTT TGTTGATCTA CTGAACTACT ACTGTAGCAC 
    TATGCTTGAA GTTTGTGTGG GCTTGGTTTG CAGTTTGTAT TGTTAAAAAA 
    AACTCAAATC TAGTGATGTA TTAAGACCTT GTTTGTGTGT ATCTTGTTAA 
    TGTGGTATAT CTGCAAGAAG GTATAATCTG TTTGGGAGTG

    Gene models with high sequence identity

    1. AT5G06510.2 [+] show detail - nuclear factor Y, subunit A10
      E-value: 9e-20; Score: 95.50

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan CCAAT-binding transcription factor, subunit B 35.128
    FPrintScan CCAAT-binding transcription factor, subunit B 1.8e-21
    FPrintScan CCAAT-binding transcription factor, subunit B 1.8e-21
    HMMPanther TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED 1.8e-41
    HMMPanther CCAAT-binding transcription factor, subunit B 1.8e-41
    HMMPfam CCAAT-binding transcription factor, subunit B 5.6e-28
    HMMSmart CCAAT-binding transcription factor, subunit B 4.5e-33

    See the detailed result >

    AT5G06510.2

    Model type
    Protein coding
    Short Description
    nuclear factor Y, subunit A10
    Computational Description
    "nuclear factor Y, subunit A10" (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR