K38044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38044

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38044

Determination of introduced cDNA(s)

  • J013081M15 - Rice Full-length cDNAs - Original: J013081M15

    full reading [+] show sequence

    Nucleotide sequence: J013081M15 - full reading
    CAAACCCATA CGACTCCTCT GCTTCTCGCT TTCTTGATTT CTTTCCTTGC 
    TGCTTGGCGC CAACGATGCG AGTCATGCTA CTCCATTTCC CTGTACTTGT
    CACCGATGAG TAATTTTTAA TTTTAACCAT AAGTAGTTTT AAAATTATCA
    TATTATTAAG CGTACAACAT ACTTTCACAA TATAAGTATT TTTAAAAAAA
    TTTATAGACT TGTAGCTTAA ATATGAGTGG TTAAATTTAA ATATGAAACA
    ATATCCTGTG GTCATTAGTC ATCACCTACG TAAGCGGAAC TGTAAATGTT
    GCTCATATGA TTTGGCTACT TGCAGAAGTT GACGGTTTTG ACAGAGATTG
    GTGATGGATA TTTTCAACTT TAGGACACTA AAGAATATCG TTCGCATATA
    CCGTCAACAA GGAGTCGACA AGATTCCAAT CAATTCCGAT GCAAGCTTTA
    TATATATTTC AAACTAGAAA AGACATATCA CCATCGTTCC ATCAATGTGG
    GATATGTTTA TGTATAGGCC TAGGAATACC TCATATTAGG AATTTACCTA
    TGTGACCTAT ATTTTTTATA AGTTGCTGGT TTTTTTCTTA TTGGTTTTTC
    AATGAAATAC ATATAAAGCA TAACAACCTC ACAACATAAA AAGGAAAGTG
    GATTCTAATC CCTCGAGATG ACGTCCCCTC ATGTATCTTT GTTTTCTTCA
    AATTCAATAA AAATAGTTAT GAAAAATTAT TTAGAGTATA GTGATATTTA
    TTGGTCCACA AAAATCAAAG AAAAAGTGGC CTACACGTTA AGTAAAAAAA
    GATAAATCTG GGTATGAATA ATTCGTTACT ATTAATTTAT CTTTTTTTAT
    CTCGGTGTGT GAGTTGAATT CGGACCTAAG ATTTTGTGGA GTGATATATA
    TACATTGTAT GAGTGTTGTC AAATTCTTTG ATAATTTTTC GTAACTGTTT
    GGATGCTTTT TAGACAAACA AGGGAACATC ACCTTTAGGG ATCAAAATAG
    TTTATCCATA GAAATCTGTA AATTTATTGT AAACTCACTC TAACTTAAAG
    TTTGCTGTAT TTATTTTTTG AAATTGATTT CTCAAATATG CCTTTTTACC
    CTTAGCTCCT ACGCAGTTTT ATTTTGTTAT ATTGTCAAGT ATGCACATCA
    AAGTATAGGT GTTAAGTTTA AGTTGTTTAA ACTCTTTGAG CGAAAAAAAA
    TTGGCATGTT AGTTGTTGAT GTTGATCTAA TAATTTATAA TTAGAAAGAA
    AACTCGATCA CTTGAGAAAT AGATAATCCC AAAATACAAT GTATCTACCG
    TTCCTGTGGA AACTGAACCA TTTCCCACAC AAAGTTCGTG CACCACAAAT
    AATGATACAA AAGCGGTAGG TGTGAGAGAA CACCTCACAT ATAAACGAGA
    AGTGGACGTA GCTATCGATC GATCAGTCCA ACCATGGCAC AATCTGCTCT
    GCTCTGCTCT GTTTGTTTGG ATATGCAGCT AGCTACTAAC CAGCTAGACA
    CTGGTACGTA TAACACTTTG CCTTTGTGTC TGTATGTCTG ATACGAATGG
    ATGATTGATT TTGTGTCGCT GCGGTGCGGT GCATAACTTT GCAAAATGCA
    GATAAGGGAG TCGCGGCCGA AGGTGACGCT GGTGGCGCGC ATGGCGGCGT
    CGGTGGCCAA CTACGACTAT ATCGTCGACT GGGAGTTCCA GATGGACGGC
    CTCGTTCGCA TCAAGGTTGG GCTAAGTGGG ATCCTCATGG TGAAGGGCAC
    CCAGTACTCC CACATGAACC AGGTCCATCA AAATGACAAT ATGTACGGCA
    CCCTTCTGTC TGAGAACGTT ATTGGCGTCA TCCATGACCA CTTTGTCACT
    TTCCGGCTCG ACATGGACAT TGACGGCGCC GACAACTCCT TCGTCAAGGT
    GGCGATGGCA CGACAGAACA CCGGCGCCGG CGAATCCCCT CGTAAGAGCT
    ACCTGAAGGC TACCCGACAT GTCGCAAGGA CGGAGAAAGA TGCCCAGGTC
    CGCCTGAAGC TATATGAGCC ATCCGAGTTC CACATTGTCA ACCCCATGAA
    GAAGACACGA GTTGGGAACC CTGTTGGTTA TAAGGTTGTC CCAGCCGGTA
    CTGCAGCTAG CCTGTTGGAT CCAGAGGACC CACCTCAGAA GAGGGGTGCA
    TTCACAAATA ATCAGATTTG GGTGACACCC TACAACAAAA CAGAGGAATG
    GGCTGGTGGT CTATTTGTCT ACCAGAGCAA AGGGGAGGAC ACACTTGCAA
    CTTGGTCCGA AAGGGACCGT CCGATCGAGA ACAAGGACCT GGTGCTGTGG
    TACACGCTGG GGTTTCACCA TGTCCGGTGC CAGGAGGACT TCCCCATCAT
    GCCCACGGTG TCGTCCAGCT TCGACCTTAA GCCAGTGAAC TTCTTTGAGA
    GCAACCCCAT CCTAGGGCAG CGTCCGACCC AGGAGAACGA CCTGCCGGTG
    TGTGCCGCCG CTGCCACGAC CTCTTGAGAC GACAGCGGAT CACCGACATG
    TGTGCGTGCA TGGTCGATGC TTCGGTGTAT CGATCTACTG ATATGGATTG
    TTCATAGTGA AAGAATGTAT CGGTACATCT ACGGATTTGG AGCTAGCCAT
    GGCTGGCTAT CTATGTTGCT CTATATATGT ATGAGCGGAT GTATGTGCAC
    TGCAGTGGTA TGAACATAAT TGAGAACCTG AAAGGAGCAG GCTTCAAGGC
    TGC

    Gene models with high sequence identity

    1. AT4G12290.1 [+] show detail - Copper amine oxidase family protein
      E-value: 1e-127; Score: 454.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Copper amine oxidase, C-terminal 1.2e-95
    superfamily Copper amine oxidase, C-terminal 4e-92
    PatternScan Copper amine oxidase 0
    HMMPanther COPPER AMINE OXIDASE 3.4e-151
    HMMPanther Copper amine oxidase 3.4e-151
    Gene3D Copper amine oxidase, C-terminal 1e-88

    See the detailed result >

    AT4G12290.1

    Model type
    Protein coding
    Short Description
    Copper amine oxidase family protein
    Computational Description
    Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1550 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 243; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR