K38106

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38106

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38106

Determination of introduced cDNA(s)

  • J013040H05 - Rice Full-length cDNAs - Original: J013040H05

    full reading [+] show sequence

    Nucleotide sequence: J013040H05 - full reading 
    GACGCCCAGA GAACTCGTCG CGCCGCCGCC ATCCTCCATC TCCGGCGACG 
    GCGGCGCTCG GACGGCGAGA GGGTTAGGAT TCGCCGAAGT GGGCGGAGGA 
    AACCCCCCCC CCTCCACGGG GAACCCGCCG CCACGACGCC CGTCACCCCC 
    CGGCGCGCGC GAGGCACGCG AGCGGAAGGA AGGACGAGAT GCGGAGGGCG 
    ATGATGGGCG TGGACGATCT GATCGAGGAG GCGAAGGTGC GCACCGTGTG 
    GTGGGCGCTC TGCGTCTTCG CCATCTCCTA CTTCCTCACG CATACGAGTA 
    AATCAATGTG GACAAATGTG CCCATGTCAA TTCTTATACT TGCGTTTCTC 
    CGATACCTTT CATTCAAAGT GGAATTCCAT TGGAGAGGCC AGCCTGTTCA 
    GAAGCAGACA CATTTGTCTC AATTGTCAAA ACGACAGTTG TCTGCTCATG 
    ATCATCGGCT TTCAACTGTG GCACCGGTTT CAAGATGGAG AAGGAAAGTT 
    GGTTCACCTT CTGTTGAGGC TGCTTTTGAA AGTTTCATTG AGAATATTTT 
    GAGAGACTTT GTGGTGGACT TGTGGTATTC ATCTATTACT CCTGATAGAG 
    AGGCCCCAGA GTTGATACGT GGTCTAATAC TTCATGCTCT TGGAGAAATA 
    TCAGGCAGGG TGAAGGAAAT GAATCTAGTT GACTTGCTAA CAAGGGATAT 
    GGCTGATTTG ATAGGACACC ATTTAGATAT TTTCCGGAAA AATCAATCTC 
    AAATTGGTGT TGATGTTATG GGAACATTGT CATCTGAGGA AAGAGATGAG 
    AGACTGAAGC AGCACCTAAT AGTTTCACAG GAACTCCATC CCGCATTGTT 
    ATCTTCAGAG CATGAATATA AGGTTTTTCA AGATATTGTT GGGGGTATAA 
    TGGCTCTAGT TTTAAGACCG CAAGATGCTC AGTATGGTTC AAATGATATC 
    AAGCTCAATG AAGCATATTC TGGTTTTGAT GCACAAGCAA GCCAACAAAT 
    AGAGAAACCT ACTAGGGCAT ATTCTGATTC TTCAAACATG TCTTCTCTAA 
    ATACATTTGA AGATCCAGCA GGAATTCCTC CTGAGTGGAC GCCAACAAAT 
    GTTAGTGTTC ATTTGTTGAA TCTGGTTGAC AAGGTGTTCC AACTAAAGCG 
    GCGTGGTTGG ATAAGAAAAC AAGTACTCTG GATATCAAAG CAGATTTTAC 
    AGTTAGTCAT GGAAGATGCA ATTGATGAAT GGATTTTAAG ACAGATCAAT 
    TGGCTCCGAA GAGATGAAGT TATTGTACAA GGAATACGCT GGATTCAAGA 
    TACTCTCTGG CCCAATGGTG TTTTCTTCAC CAGGTTGGAT GGATATCAAG 
    GAAATGCAGG TCCAAGCCAA TTTGATAAGC ACCCATCTGG GAGTGCTAAT 
    CAGGCTAGTG GCAACAGAAA GGATAGTGCA AGCTCTTTTG AACAACAACT 
    GGAGGCATCT AGAAATGCTA GTGAAGTTAA GAAACTTCTT CTAGGTGGAA 
    CTCCGCCGAC ATTAGTCAGC ATAATAGGGT ACAAGCAGTA CCAGCGTAGT 
    GCGAGGGACA TTTACTACTT CCTCCAATCC AATGTCTGTG TGAAGCAGCT 
    TGCTTATGCA ATGATAGAGC AGGTGCTTGT GTCGCTCTTC CCAGAGCTTC 
    GTCAGCTAAT AGAGGACATA CATGAGAAAG GTCGTAAGGA GCAAGCGTCA 
    TTCACTTACC AACTTTGACT GAAAAGACGT CTTGATCCTT CAAAAACCTG 
    GTACTGCACA AATGGCCTTT GCTTGTTTCT TCTTTTACTC TGGCATTTTG 
    CCCATGGCGA AGCTGCCTGG CACGCAAAAA TTTTGCAGAT GGATTTCAAC 
    AGCGTAAAGT TGGATTGAGG ATGCAGTTGT TGATTATCCA ACCAAAACTA 
    TGTACAGATG TATATCAGAA GCTGTGTAAA TTAGTCCTCT AATGCATACC 
    AAGAACTACG TTCTTACAGT GATCTCTGAT AGTTTGATGT ATCGTATCAT 
    TCTTTAATTC TTTTTCTCTC CTCAATGTAT TCTAGTCGTT CCTAGCTCTC 
    TTGGCTGAGG TTTGTAAAAA TATCGAATGT TCCAATTGTA TAGGCGTACC 
    GTATATCTGA CTGTCCATTC TTCAGTTGAA GAACTCAATC CATGCATCTT 
    GGCAAGATAG CAATCAAGAA CCTTTGACTG

    Gene models with high sequence identity

    1. AT2G15900.1 [+] show detail - Phox-associated domain;Phox-like;Sorting nexin, C-terminal
      E-value: 6e-83; Score: 305.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Phox-associated domain 36.283
    HMMPfam Phox-associated domain 8.5e-35
    HMMPfam Sorting nexin, C-terminal 6e-18
    HMMPanther gb def: Hypothetical protein At2g15900 4.3e-93
    HMMPanther PX SERINE/THREONINE KINASE (PXK) 4.3e-93

    See the detailed result >

    AT2G15900.1

    Model type
    Protein coding
    Short Description
    Phox-associated domain;Phox-like;Sorting nexin, C-terminal
    Computational Description
    Phox-associated domain;Phox-like;Sorting nexin, C-terminal; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT1G15240.2); Has 1078 Blast hits to 871 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 658; Fungi - 203; Plants - 141; Viruses - 2; Other Eukaryotes - 74 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR