K38109

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38109

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38109

Determination of introduced cDNA(s)

  • J033136L03 - Rice Full-length cDNAs - Original: J033136L03

    full reading [+] show sequence

    Nucleotide sequence: J033136L03 - full reading 
    GGTCATAAGC AAACCAAACA AAAAAACCTC ACCATCATCG ACCCACTTGT 
    TCCTAGCGAT CTAGAACGAG AGACTTGGCA ATGGCGGGAA GCGGCGAGCT 
    GAAGCTGCTG GGCGTTTGGA GCAGCCCGTA CGCGATCAGG GTCCGCGTCG 
    TCCTCAACCT CAAGTCGCTG CCGTACGAGT ACGTGGAGGA GAACCTGGGC 
    GACAAGAGCG ACCTCCTCCT CGCCTCCAAC CCGGTGCACA AGAGCGTCCC 
    CGTCCTGCTC CACGCCGGCC GGCCGGTGAA CGAGTCGCAG GTCATCGTGC 
    AGTACATCGA CGAGGTCTGG CCGGGCGGCG CCGGGGGACG CCCGTCCGTG 
    ATGCCCTCTG ACCCCTACGA GCGCGCGGTG GCGCGCTTCT GGGCCGCCTA 
    CGTCGACGAC AAGGTCCGGC CGGCGTGGCT GGCCATCCTG TTCGGGAGCA 
    AGACGGAGGA GGAGAGGGCG GCGGCGGTGG CGCAGGCCGT GGCGGCGCTG 
    GAGACGCTAG AGGGCGCGTT CGGGGAGTGC TCCAAGGGGA AGCCGTTCTT 
    CGGCGGCGAC GGCGTCGGGT TCGTCGACGT CGTGCTCGGC GGCTACCTCG 
    GGTGGTTCAC GGCGATCGAC AAGCTGATCG GTCGCAGGCT GATTGACCCG 
    GCGAGGACGC CGGCGCTGGC CGCGTGGGAG GAGCGGTTCC GCGCCACCGA 
    CGCGGCCAAG GGAGTCGTGC CGGATGACGC CGACAAGCTG CTCGAGTTCA 
    GGCAGACCCT GCTTCGCTGG AGCGCATCCA AAGCAAAGTG AGATGACATG 
    ACACGACTGT TTTTCGCCAT GGTGATGCTG AATCTAAGTA TGCTGTACGT 
    GTGTTTGTAT AATAACAAGG AGAAATGCTG CTGCACGATT GAGTTTCCTT 
    GATCGATTCC TCAGCATAGT TTCTTTTTTT TTTATCTAGC TATATATTTA 
    ATATATAGCG CCATGTTCTT CATAATAAAA GGGCTATTTT AAGCTGTAAA 
    TTGCATACAT TTGTATTTAC ATAATAAAAA AATGAATCTT

    Gene models with high sequence identity

    1. AT1G10370.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 1e-45; Score: 180.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther GLUTATHIONE S-TRANSFERASE 8.8e-111
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 8.8e-111
    HMMPfam Glutathione S-transferase, N-terminal 0.000000035
    HMMPfam Glutathione S-transferase, C-terminal 0.000014
    Gene3D Thioredoxin fold 4.3e-26
    Gene3D Glutathione S-transferase, C-terminal-like 5.6e-46
    superfamily Glutathione S-transferase, C-terminal-like 2e-42
    superfamily Thioredoxin-like fold 4.4e-21
    ProfileScan Glutathione S-transferase, N-terminal 19.085
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 19.105

    See the detailed result >

    AT1G10370.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Computational Description
    EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, response to karrikin, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 18 (TAIR:AT1G10360.1); Has 6064 Blast hits to 6029 proteins in 1096 species: Archae - 0; Bacteria - 2896; Metazoa - 397; Fungi - 130; Plants - 2065; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR