K38113

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38113

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38113

Determination of introduced cDNA(s)

  • J033041D19 - Rice Full-length cDNAs - Original: J033041D19

    full reading [+] show sequence

    Nucleotide sequence: J033041D19 - full reading 
    GTGCTGGCCT AAGCTAACTC AATCAAACCT CCCTAGCTTG GCAGAATAGT 
    TAATGTTAAT CACCTGATTA AAATTAGATT AGTCCCCTCC TACCCAGCTA 
    ACTACTGCTT CTATTTCACG GAGAAAAATG TCTTCCTAGG CTTTCTCTTT 
    CAGCTCGATC GATCCACAGC TCAGCTAGCT CTCTCTCTCT CTAGCGACAA 
    GCAAGCATGG AGCAGCTGTT CGTCGACGAC CCAGCCTTCG CGAGCAGCAT 
    GTCGTCGCTT GAGGCGGACA TCTTCTCCGG CGCCGGCCAG CTGCCGTCCT 
    CGCCGTGGCT GGACCTAGAC CTCGACGACG ATGTCCAAGA CCTCTCCATG 
    GCGCCGACGA CGGCGAACGC GGTGTCCTCC GGCTACGGCT CCGGCGGATC 
    CGGCTCCCAC AGGAAGCTCA GCCACAACGC CTACGAGCGC GACCGCCGGA 
    AGCAGCTCAA CAAGCTCTAC TCCTCCCTCC GCGCTCTCAT CCCCGACGCC 
    GATCACACTA AGCTGAGCAT CCCGACGACG GTGTCTCGCG TGCTCAAGTA 
    CATACCCGAG CTGCAGAAGC AGGTGGAGAA TCTGGAGAGG AAGAAGAAGG 
    AGCTGACGAC GACGAGCACC ACCAACTGCA AACCAGGAGT GTTGGGGAGC 
    CAGCTGATGA GCGAGGGCAT GGCTCCCATC GTTTCGGCTA CCTGCATCAA 
    TGACATGGAG ATCATGGTTC AGGTCAGCTT GTTGAGCAAT GTGGCGGGTT 
    CAGTTCTTCC TCTCTCCAAG TGTATCAAAG TACTGGAGAA CGAAGGTCTT 
    CACTTCATCA GTTCATCGAC TTCCTCCGGA TTTGGGAACA GGACATTCTA 
    CAGTATCCAT CTTCAGAGAA GTGAAGGAAC GATCAACGAG GAGTGCCCAG 
    CATTTTGTGA AAGGTTGGAG AAAGTCGTCA GGAACAAAGC AAAGCTTTAA 
    GCACTAGTAC CGCGCGCGCG TGCCTATGAT AATCCTGAAT TAATCAAGGG 
    CCAAAATCTA GCTAGAATCC TACAACTAGC GTAGTGTGGT GGTGGTCGTC 
    TTCGAGTTCG ACGCGCCGCC GCCGCCGCTC ATCGCGACGA CAAGAGCCTC 
    GCCAGCGTCC GCAGTAGCAG CTTCCTAGTC TTGTTGCACT CCGAGATCGT 
    CTCCAGCCTC GGCGACCACG GCTGGTTCCT CCGCCCCATC AGCAGCGCGT 
    AATGCCGCTT CAGCTCCGGC GTGCTGCACA GCTCCGTCGC CGTCGCCGTC 
    GCCGTCGTCG ACGGCTTCCG GCGGCGCGCA CCGCCGCCGT TCTCGTCGCA 
    GCTGATCACC TTCTCGATGA ACTCCGGGAG GACTCGGATG AGCGTGGCGC 
    CGCCCTCGCC CTTGACGTAC TCGAACGGGC ACTGCCCCGG CCCAGCCACG 
    GACACCTTCT TCGACGGCGC CGGCGACAGC GACGCGAGCG CCGCGGCGGT 
    GAGCACCTTG AAGCAGGAGA AGCGCTCGGC GGGGAGGACG AAGTACGTCC 
    GCCCCGCCAT CAGCTCCTCG CCGGCGGACA CCACCGGGAT CGGGAGGCCG 
    ACGTAGAAGG AGTCGGCCGC GCAGACGTGG TCACCGGGGA GCTCCGCCGT 
    GACGTCCCCC GCCACGGCGC ACACCCCGCC ATCGTCGTCC AGCATCCTCG 
    TCTGCCCGCC CCAGTACACC AGCTTCACCC CCGCCGCCGC CGTCGCCGGC 
    AGGTGCATGC ACGGGGAGAG GCCGTTGCCC ATGGCAACTG ATGTGTCTAG 
    AACCTTCTAG AACGAGCTCG AGCTTGCAGA TGGAAGAAGA GGAGAAGAGG 
    AGATGCTTGT GTGAATTGGG GCTCGTGGTT GCGAGAGGGG AATATATATA 
    AGCGAGCGTT GAACGGGGTT GACTTTGGAA AATTCAAAGA TGGAGGAGGT 
    AAATACTCCT ACTACTACTG GTCTGGCTTG GTCAGCGGTC AAAGGCGATG 
    GCTTTTGAGA CGGAAGCGGG TCACGTGGCA GCTGCCGATT GGGCCGCGGA 
    GGGGGAGAAG CGAGTTGCGC GTGCGCATCG TCGTTGGTCG GTGTCGCCGA 
    TCGGGTTGGA TCCAACCAGA TATTCAGAAT TTCAGATCAG ATGCACAGTA 
    GTACAGTTGC AAGTTGCAAC TAGAAGTTGC CGATTAATTT GACAGCGCCT 
    GGCTGCAGGC TGCTACCGCA CTCCAACGCC GACATGGCAG GTGTTTTTTT 
    TTTAAAAATC TTGTTCCAAA TTTGGAGCTG ACTGAAGAGA GTTTTATACT 
    CCGTATTATG GGTATGAGTT CATTTATACT CCTATGTCAC TTATCATCGA 
    TTTGTTTTCG GACTTATTCA CTTTGTAGCT ATTTTCAACC ATTACAAAAT 
    TTAACAATTC CCATAATTTT AGCAAATT

    Gene models with high sequence identity

    1. AT2G41240.2 [+] show detail - basic helix-loop-helix protein 100
      E-value: 3e-26; Score: 117.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Helix-loop-helix DNA-binding domain 5.2e-09
    Coil coiled-coil 0
    HMMPfam Helix-loop-helix DNA-binding domain 3.2e-12
    Gene3D Helix-loop-helix DNA-binding 5.3e-07
    superfamily Helix-loop-helix DNA-binding 6.2e-15
    ProfileScan Helix-loop-helix DNA-binding domain 11.602
    HMMPanther gb def: Achaete-scute complex protein T5 (Ach 9.2e-05
    HMMPanther Achaete-scute transcription factor related 9.2e-05

    See the detailed result >

    AT2G41240.2

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix protein 100
    Curator Summary
    Encodes a member of the basic helix-loop-helix transcription factor family protein.
    Computational Description
    basic helix-loop-helix protein 100 (BHLH100); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to water deprivation, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Achaete-scute transcription factor related (InterPro:IPR015660), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G56970.1); Has 850 Blast hits to 850 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 130; Fungi - 33; Plants - 678; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR