K38116

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38116

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38116

Determination of introduced cDNA(s)

  • J023002L15 - Rice Full-length cDNAs - Original: J023002L15

    full reading [+] show sequence

    Nucleotide sequence: J023002L15 - full reading 
    GGATTGGTGC TCTCTTTTAT CGATCTGGAA ACTGGAATAT ATTATATATA 
    TAGAGAGAGA GAGAGAGGGG CAAACAAGAA GAAAAGAAGA AGAAGATGGT 
    GGTGATGGTG AGGCAGCGGC AGCAAAGGCA GCCGGTGATG GTGGTGGTGA 
    TGGTGTGCTG GGCGCTGCTG GCGACGGCGG CGCGCGGAAA CTGCCGCGAC 
    GAGTGCCTCG CCGGGTGCCA AGGTTGGGCC ATCATCTGCC ACCTCTCCTG 
    CAACAGCGCC TGCCTCGGCG AAGTCGGCAT CTCCGCCATG AGCACAGCCA 
    CACCACAGTC CATCACGGGT CAGGATCAGC AGCATCCATC ACAGCAGCAG 
    CAACAAGCAC AACAATCGGT CTCCGTGCTC AAGGGTCTCG ACCCTGACAA 
    AATCTGAAAC GAATTGTTTT CTTGCTACCA TTCATTTTCA AATCCCATAT 
    ACATACACTG CACTACACAC ACACACACAT GGAATAATTC ATGTTTTCTC 
    TTCAAATTCC ATTGCTCTTT CTATTAATTA TTAATTTACA CAGCACGTTC 
    CACATAGATT AGTATTGTCA ACATTTTTGC CCCAACCATG TACACCTCAC 
    CCCTAAAGTA AAAAAAGTCA TTCATTTGTC TAAACTAGTA TAATAACAAA 
    TTACGGGCTG CCTTCTGTAA CGAAGCCAAC GAATCAAAAA TAAACAACAC 
    AAACTCTATA CGTACGCACG TCTGGGAAGC TATGCAAGTT AAGATTCTGG 
    CAGCCGTCGC GCTGAGGCCC CTTCTCCTCT TCATCTCCAA TCCTTCTTCA 
    TTTCCACAGT TTCACGGATC TGTCATGGCT CGCAGAAGCT ATCATCCCAG 
    TGAACTGAGA GTGCGCCAAA GCAGCTATAA GGCCTTCATG TGCCTGGACC 
    GTGTTTCTGT GATTATCTGA CAAGCTCCAT AGCTCCATCG TCTGCACAAA 
    TGACACCAAA GACCATCAAT CAGTTGCCAT TCCGACGGTT AAAAGTCTTT 
    TGGACACACA AGACATATTA TCGAGGAGGA GCAATTTGTC TAAGAAATTA 
    ATATAGGTAG CACTTTCTTA AGACATGTAA TATGTGCTCG GCTATTTACA 
    TTGATACCAC CAGGGCGGTC AATGCTTTGT GACTTAATAG CGAGAGGAAA 
    ATAGTGTACT TGTCTTTAGG ATAAGTGAAG CCATATAATA CTCGTC

    Gene models with high sequence identity

    1. AT4G32551.2 [+] show detail - LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
      E-value: 7e-11; Score: 65.50

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40 repeat 2 12.213
    ProfileScan WD40-repeat-containing domain 11.497
    HMMPanther gb def: Guanine nucleotide-binding protein be 0.0003
    HMMPanther GUANINE NUCLEOTIDE-BINDING PROTEIN BETA (G PR 0.0003
    HMMPfam WD40 repeat, subgroup 4.4e-07
    HMMSmart WD40 repeat 0.0013

    See the detailed result >

    AT4G32551.2

    Model type
    Protein coding
    Short Description
    LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
    Curator Summary
    LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.
    Computational Description
    LEUNIG (LUG); FUNCTIONS IN: transcription repressor activity, protein heterodimerization activity; INVOLVED IN: flower development, negative regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: LEUNIG_homolog (TAIR:AT2G32700.6).
    Link
    InterPro Scan - TAIR