K38123

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38123

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38123

Determination of introduced cDNA(s)

  • J033076M19 - Rice Full-length cDNAs - Original: J033076M19

    full reading [+] show sequence

    Nucleotide sequence: J033076M19 - full reading 
    GACTCTTCCC CTTGCTTCGC TTCGCTCATC AGCTTGACCG CCTCACCTCA 
    CCACCCCAAG CTAGACGACC TCGTCTTCCT CCTCCACCTC CTCGCGACCT 
    CGCATTGTTA GATCAGCCTC GATTCATCTC CAATCTTTCG GCGCCGCTCC 
    CGGAGAGAGG GACAGCGGCG CAGGCGGTGA GCACGAGGAG GAGCAGAGCT 
    AATCAAAAGC CCTCTCGCCG CTCGAGCTCT CGTGCACCGT GCCGCCGCCG 
    CCGACGCCGA CGCTGACGCC GACGGCTTAA TTCAGTCTTG TCGGCTACAT 
    CTCTTGGCGT GCTGAAATTG GTGGGAGCAC GAGAGCGGCG CCAATGGGGA 
    CGAGGCCGTG CGCCGGCGTG GCGTCGGCGG TGGCGGCGGC GGTGGCCGTT 
    CTGCTGCTCG CCGTGTCTTG CTTCGCCGCG GCGGCGACGA CGACGCAGAA 
    GCATGGCAGG ATGTCAGGGA AGGGCGGCGA CGTGCTGGAG GACGACCCGA 
    CGGGGAAGCT GAAGGTGTTC GTGTACGAGA TGCCACGCAA GTACAACCTG 
    AACCTGCTGG CCAAGGACAG CCGGTGCCTG CAGCACATGT TCGCGGCGGA 
    GATCTTCATG CACCAGTTCC TCCTCTCCAG CCCCGTGCGC ACCCTCGACC 
    CGGAGGAGGC CGACTGGTTC TACACACCCG CCTACACCAC CTGCGACCTC 
    ACCCCGCAGG GCTTCCCGCT CCCCTTCCGC GCCCCGCGCA TCATGCGCAG 
    CGCCGTCCGC TACGTCGCCG CCACGTGGCC CTACTGGAAC CGCACCGACG 
    GCGCCGACCA CTTCTTCCTC GCGCCGCACG ACTTCGGCGC CTGCTTCCAC 
    TACCAGGAGG AGCGCGCCAT CGAGCGCGGC ATCCTCCCGG TGCTCCGGCG 
    CGCCACGCTG GTGCAGACGT TCGGCCAGCG CCACCACCCC TGCCTCCAGC 
    CGGGGTCGAT CACCGTGCCG CCGTACGCCG ATCCCCGCAA GATGGAGGCG 
    CACCGCATCA GCCCCGCGAC GCCGCGCTCG ATCTTCGTGT ATTTTCGGGG 
    GCTTTTCTAC GACATGGGGA ATGATCCCGA GGGCGGGTAC TACGCCCGCG 
    GCGCGAGGGC GTCGGTGTGG GAGAACTTCA AGGACAACCC GCTGTTCGAC 
    ATCTCGACGG AGCACCCGGC GACGTACTAC GAGGACATGC AGCGGGCCAT 
    CTTCTGCCTG TGCCCGCTGG GGTGGGCGCC GTGGAGCCCC CGGCTGGTGG 
    AGGCGGTGGT GTTCGGGTGC ATCCCGGTGA TCATCGCCGA CGACATCGTG 
    CTCCCCTTCG CGGACGCCAT CCCGTGGGGG GAGATCAGCG TGTTCGTGGC 
    GGAGGAGGAC GTGCCGAGGC TGGACACCAT CCTGGCGTCC GTCCCGCTCG 
    ACGAGGTCAT CCGGAAGCAG CGGCTGCTGG CGTCCCCGGC GATGAAGCAG 
    GCCGTGCTGT TCCACCAGCC GGCGAGGCCC GGCGACGCGT TCCACCAGAT 
    ACTCAACGGG CTCGCGCGCA AGCTGCCGCA CCCCAAGGGC GTCTTCCTCG 
    AGCCCGGCGA GAAGGGCATC GACTGGGACC AGGGCCTCGA GAACGACCTC 
    AAGCCATGGT AGCCGCCATG GATGATGAGC TATATACACA CAGATTATAG 
    AGACGAGACA TGGATTGGAT CGCGAGAGAT GTACATTGAT TGGTTCGTTT 
    CTTCTGATTA AGCCGCTGTT AATTTCTTCT TCTTTCTTTC TTTTTTCTAG 
    TTTTTTTTCC TTGTTGTTTT TTCTTTCAAG GAGGCGATCC GTGTTCATGT 
    ATTGTGCAAT TGTGCGTGCT TAATTAATCG TTGCAATGTG CACGATTTCT 
    TCT

    Gene models with high sequence identity

    1. AT5G61840.1 [+] show detail - Exostosin family protein
      E-value: 0; Score: 658.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther EXOSTOSIN-RELATED 2.7e-130
    HMMPanther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERAS 2.7e-130
    Coil coiled-coil 0
    HMMPfam Exostosin-like 2e-74

    See the detailed result >

    AT5G61840.1

    Model type
    Protein coding
    Short Description
    Exostosin family protein
    Computational Description
    GUT1; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT1G27440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR