K38134

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38134

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38134

Determination of introduced cDNA(s)

  • J033066J12 - Rice Full-length cDNAs - Original: J033066J12

    full reading [+] show sequence

    Nucleotide sequence: J033066J12 - full reading 
    GCTGGTCTCT CGCTCTCTTC GCTCGCGGCG GCTTCTCCGC CTCCGCCTCC 
    GCCGCCCTCT CCTCCTCTCG CCTCGCCGCC GGCGCCGCCA GCCACCGCGC 
    GGGTCGGGCG GGCCGTATCT TCCTTTCTGT TCCGATGGCT TCCGCGAAGG 
    TGGAGAACCG CGGCGGCGGT GGGTTCGGTT CGAAGAGGTC ACGCAACGAC 
    GTGTCTGTAA GGGAGGGGGA CTGGACTTGT CCTCAGTGTG GTAATGTCAA 
    CTTCAGTTTT AGAAATGTTT GCAACCGCGG AGCCTGTGGT GCACCCCGTC 
    CATCACCGAG TCTAAGCCCA AGAGTGCCAC CTCCTCCTGC TGCTGGATAT 
    GATCGGCCAC ATCTTGGATA TGATCGGCCA CATCTGTTTT ATGGTAGTGC 
    TGGCACCCCA CCTCCTATTC CTCTTGGATC TGGTAGCTAT GGTGCCCCCT 
    ATCCACATCT TGGCTTGCGG TATGGATATG GTCCACCAGT AGGACCTCCT 
    GCTTCATATG GCCTTTTTTC TTCTTATGGT CAACCTGGAC CAATGGGCAG 
    TCCGATGGGA GGCATGGGCT ATGGCCCTGG ACCTGAGCTA GGCCGATATG 
    GTTATGGTTT TAGAGGATCT CCAATGCCGG TTTCTAGCCC ATGGTCTGGT 
    GGAGCATTAG TGGAAAATAA TGACAGCTCT GCTTCACGCA AGCGTCGTGG 
    AGGCCCAGAT GGAATGGCTG AGAATGACTG GATCTGCCCA AAGTGTGAGA 
    ATGTCAACTT TTCCTTCAGA AACAGTTGCA ATATGAAGAA ATGTGGAGCT 
    CCAAGGCCAA GCCCTGGATC TAATGCTACC CCATGTCGCA AAGACAAGGA 
    CGCTCCGGAA GGGAGCTGGA CCTGCCCGGA GTGCAACAAC CTGAACTACC 
    CTTTCCGCAC GGCGTGCAAT CGGAAAGGCT GCGGAAGCAG CAGGCCGGCA 
    GCGGCCACGG CGAACTAGGA CCCTACTAAC TTTGCGCCGG CGATTGGGGG 
    CAGATAGAGT ATTGTTGTAT CCTAGCTATA TACAAGTTAA TTTAAACTGT 
    AAACGGCTCA AATATATTTT CTTGTGGCCT GAGATTCGTT GTGCCTGATT 
    TTTAAATTCG CCTTCTGAAT TTCCTTTACG ATTTATAGAG CTTTTATATA 
    CATTGGACT

    Gene models with high sequence identity

    1. AT1G67325.1 [+] show detail - Ran BP2/NZF zinc finger-like superfamily protein
      E-value: 5e-37; Score: 152.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ZINC FINGER PROTEIN 5e-24
    HMMPfam Zinc finger, RanBP2-type 1.8e-08
    HMMPfam Zinc finger, RanBP2-type 1.8e-05
    HMMSmart Zinc finger, RanBP2-type 7.8e-05
    HMMSmart Zinc finger, RanBP2-type 0.00081
    HMMSmart Zinc finger, RanBP2-type 0.0045
    superfamily Znf265, first zinc-finger domain 1.6e-09
    superfamily Znf265, first zinc-finger domain 3.4e-07
    superfamily Znf265, first zinc-finger domain 4.8e-06

    See the detailed result >

    AT1G67325.1

    Model type
    Protein coding
    Short Description
    Ran BP2/NZF zinc finger-like superfamily protein
    Computational Description
    Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR