K38139

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38139

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38139

Determination of introduced cDNA(s)

  • J013096A05 - Rice Full-length cDNAs - Original: J013096A05

    full reading [+] show sequence

    Nucleotide sequence: J013096A05 - full reading
    GGCCGGCAAA CCATTGCGCC GCCGCCGCCA TGGTCCACCA CCTCCGGAGG 
    CATATGATTT CTCTCCTCCT CCGGCCAGCG TATCCTCATC CCACCGCCGC
    AATCTCTCCC CTCTCCTCCC TCCGCCGCCT CCTCCTCTTC TCCACCACCG
    CCGCGCCCGT CTCCCCCGAA CTCTTCGCCG TCGAGGACTA CCTCGTCGCC
    ACCTGGGGCC TCACCGGAGC CCAAGCGCGC AAGGCCTCGA AGAAGCTCTC
    CCACCTCAGG TCCCCCTCCA AGCCCGACGC CGTCCTCGCC TTCCTCTCCG
    ACCTCGGCCT CCCGCCCCGC AAGATCGCCG CCGTCGCCAC CGCAGACCCG
    CGCTTCCTCT GCGCCGACGT GGAGAGCAAC CTCGCCAGGC GCGTCGACGA
    GCTCGGCGGC CTGGGACTCT CCCGCTCCCA GATCGCGCGC CTCGTCCCGC
    TCGCCCTCAC CTGCTTCCGG TCCAGCTCCG TCGGCACGAA TCTAGGGTTC
    TGGCTCCAGA TCGTGGGCTC GTTCGACAAG ATCCTCAAGG CCCTCAGGAT
    GAACTCCTCG CTACTCGGCT CCGACCTCGA GAAGGTGGTG AAGCCGAACC
    TGGAATTGCT AAAGCAATGT GGGATGAGTG ATTTTGCCAC TAGTTTCCCC
    TTGTACACCA GCAGGCTCTT CACCGCGAAC CCTATCTATC TCCGGGACGC
    CGTGGCACGG GTGGAGGAGT TAGGCCTGGA CCGCAGCTCG AGGATGTTCC
    GGCATGGGCT CATCGCGGTG GCTTTCACGA GCAAGGAGTC CGTTGCGAGG
    AAGATACAGG TGATGGAGGA GCTTGGGTTT TCGCGGGATG AATTGTTGAT
    GATCATCAGG AAGGCACCGC AGTTGGTGGC CTCATCGGAG GAAAAGATAC
    GGCAAGCCGC TGAATTCTTG AAGAGGGATG TTGGTTTGGA GGGACGGTAC
    ATTGCGCATA GGCCAGTGTT GTTTTTGTAC AGCCTTGAGC GGCGATTGTT
    GCCTCGGCAT CACTTGCTCA AGGTTCTCAG GATGAAGGGA TTGCTGGATT
    GTGAGTTGGA TTACTACAAC ACAGCCGCGA TGAGTGAGAG GAAGTTTGTG
    CGGAAGTTTG TGGATCCTTA CAAGTGCCAC ATTCCAGGCC TCGCTGATGC
    TTATACGTCC AGTTGTGCCG GGGAAACAGC AAATGGAGTT GCTTCACTGC
    TTGGTGTGTA GACAGAAATG GATTATGCGC TACAGTTTGT GGAGAATTCG
    GCTCAATTAC TGCGGAAGAA TGCAAGATAT TACGGTTTGT CCCCTGTTAC
    TTCATTTTGT AATGTCTAAT GTTGACTCTT CTGGTGAAAA AGCATGTAGG
    TTGTTTGGTA CTTGTTGCAT CTTGTAGCTC TGGGGATTGA GAACATCAAA
    GGTTTTATGG CAATTACTTA CTCCACTTAG CG

    Gene models with high sequence identity

    1. AT1G21150.1 [+] show detail - Mitochondrial transcription termination factor family protein
      E-value: 8e-23; Score: 105.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 0.000000000033
    FPrintScan PRICHEXTENSN 0.000000000033
    FPrintScan PRICHEXTENSN 0.000000000033
    FPrintScan PRICHEXTENSN 0.000000000033
    HMMSmart Mitochodrial transcription termination factor-related 10
    HMMSmart Mitochodrial transcription termination factor-related 0.011
    HMMSmart Mitochodrial transcription termination factor-related 0.1
    HMMSmart Mitochodrial transcription termination factor-related 0.35
    HMMPfam Mitochodrial transcription termination factor-related 0.0000094
    HMMPfam Mitochodrial transcription termination factor-related 6.2e-21

    See the detailed result >

    AT1G21150.1

    Model type
    Protein coding
    Short Description
    Mitochondrial transcription termination factor family protein
    Computational Description
    Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1); Has 922 Blast hits to 791 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 903; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR