K38209

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38209

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38209

Determination of introduced cDNA(s)

  • J013001D17 - Rice Full-length cDNAs - Original: J013001D17

    full reading [+] show sequence

    Nucleotide sequence: J013001D17 - full reading 
    GAGATCATCC AACCAATAGC TAACCACGAA AGTGCAAGTG AGACTAACCT 
    TGTACCTGTA GTGAGTACTG GTGATGATGG CTGCGAGTAA CGGAGAGGAA 
    CCTCCTAGCA CATCCATGGC AACAAGTTCT TCTCCATTGC CCATGGTCGC 
    TCAACTGATG GTCACCACAG ACCGTGCTGT AAGCCAGCAG CTGAAGGATC 
    TAGTGAATAA GGAAAACTCC ACTACCATGG TGGCGGCGTT GTCCTTAAGT 
    AGAGAGGCTT ATGAGGTGGC GATGGCGTTG AAGAACGGGG AGGAGCATCG 
    GCAAGGGAGA TGCAGCGGCA AGGGAGATGC AGCGGCAATG TTGATGATGA 
    TGGCGTCCAA AAAAGAAGAC GCCGCAAAGC CTTCCACTGC GTCCATGAAC 
    CCCCTGTTGC TATCACTAGC ATCGCAGGGT CGTCTAAATG ATTATGATGC 
    AGAGTCGGGC ATGGATCTGG ACGGGGTCAC CACTGAAGGG AACACTGCAC 
    TCCATGTTGT GGCCACCTGC GGTGATGGCC CGGGCTACTT GAGGAGTGCA 
    GGCGTCATCT ACAGCAGGTC CCAACATCTC ATGTTAGTGC AGAACAACAA 
    CGGTGACACA CCTCTGCACT GCGCTGTCCG GGCTGGCCAT TCCAAAATGG 
    TTGATCATCT AATTGATCTG GTTGAAACTA AGGACAACTC CCCTAGCAGC 
    GCGACACTGG AGGAACTCCT GAGAAAGGAA AACTGCCGTA AGGAGACGGC 
    CTTTCATGAT GCCGTCTGCA TTGGAAATAA GGATATAATC ACCAACCTTC 
    TTAAATATTA TTCAGAATTG GCCGGCTTCC TTATGGATGC AACAGGTACT 
    TCACCGTTGT ACCTAGCTGT CTTGCATCAA CAGGTCGACA TTGCAAAGTT 
    ATTGCATCAA ATGACAGACG GGAATCTTTC GTACTCTGGC CCAAATAGAC 
    AAAATGCATT GCACGCAGCC GTTCTACAAG ACCAAGTGAT GACCAAAATG 
    TTGTTGAACT GGAACAATGG CCTCACAGAG CAATCGGACG AAAATGGGAG 
    CACGCCACTC CATTTCGCTG CATCACTTCT ACGGAGAGGA ATATACAATA 
    CGGTCATCCC TGTGCTGAGA GCCAACCCAG TTCAGTTGTA TAAGCAAGAC 
    TCTGAAGGAT TGTACCCCAT ACACGTCGCT GCCTCCTCCG GTGCCAATCT 
    GACAGTCAAG TCCTTTATTA GAGAGCGACC TGAGATCGCT GGTTTACGCG 
    ATTCTAAGGG GAGGACTTTC CTTCATGTTG CCGTTGAAAG GGAAAGATGG 
    AATGTAGTTG TGTATGCTTG CCATACTCAA TCGTTGGCTA GGATTTTGAA 
    TATGCAAGAC AACGATGGAA ACACTGCATT GCACATAGCA GTGAAGCATG 
    GGAATAAGGC TATCTTCTGT TCTCTACTGA TGAATAAGGA GGTAAACTTA 
    AATATATCAA ATAATAAGGG GCAAACTGCT TTAGATATAT CGCAGAGTAA 
    GATTCTTGCA GGATATTTCT ATGGATGGAA CCCTAACAAA CTGATATTGC 
    GGGCACTAAC GTTTTGCAAT GCAAGAGGTG GTTGTCGTCG GGTAGATCAC 
    CTGCAGGAAC AATATATTAT TCATCAAAAA CAAGTAGATG AAGTGAGGGA 
    ATCGGACAAA ATGACAAATT CAACACAAAC TTTGGGTATT GCCTCAGTGC 
    TGATTGTTAC TGTCACGTTT GGCGTAATGT TTGCCATACC AGGAGGTTAC 
    AAAGCAGACG ATCACAATAA TGGTGGCACA CCAACACTTG CTGGAAGTTA 
    TATATTTGAT GCATTCATCA TGGCTAACAC AATAGCATTC ATTTGCTCGA 
    GCTTGGCTAT CATCAACCTC ATGTACTCTG GAATGCCTAT GGTTAGTCTA 
    CCACTTCGCC GTCGGCACTT TAACATATCT CTACTCCTGG CCTTCAGTTC 
    AGTGACAAGT TTGGGTACTG CCTTTGCACT AGGTATGTAT TTAGTGCTGG 
    CCCCAGTGAC TCGATGCACT GCAATTGCAA TCTGTGCAAT GATGATGATT 
    GCATCACTGT GCTTATATAC GGAGCCTTTA AATGGCGTTC GTTTTGCAAT 
    AGCACTATAT GTTAGGAGGG GCAATCGGGT ATTGCTAGTT ATTGCACAGA 
    TTCTACTTAT TCGAACGCTA ATTACATATT GGCCCTGTGT GATAATCTTT 
    GGCTGGGCAG CGATTTCAAC AAAAGATGGG CACACAAGAC ATGGATGAGT 
    CGTCATTAGA TGCACCCGAC CAGAGAGACA GAGAGATGAC CAAAAGTATG 
    TAGTAAGTTT GAAATTTAAT CTATATTTGT AGTTGCCAAT CATTATTCAC 
    GTGATATCTC TCCAGAATTA ATATTTGATT CGAAAAAATA TGTAGCTACA 
    TGCTGTGCTC AGCTCAGATA TTGTAATTTC TTTTTGTTAT TTCTATTTTT 
    AACATTCAGA CCCTGTTAAT TTCCTTTTAT TAAACCATCA TGGTACGTAC 
    TGTCAATGAA TACTTGAGGC CTGTTCGCC

    Gene models with high sequence identity

    1. AT4G03460.1 [+] show detail - Ankyrin repeat family protein
      E-value: 3e-43; Score: 174.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ankyrin repeat 6.2e-05
    HMMPfam Ankyrin repeat 8.3e-05
    superfamily Ankyrin repeat-containing domain 1.9e-48
    Coil coiled-coil 0
    ProfileScan Ankyrin repeat 10.045
    ProfileScan Ankyrin repeat 11.461
    ProfileScan Ankyrin repeat-containing domain 39.682
    Gene3D Ankyrin repeat-containing domain 0.0008
    Gene3D Ankyrin repeat-containing domain 3.2e-32
    HMMPanther ANK REPEAT-CONTAINING 4.8e-41
    HMMPanther ANKYRIN REPEAT-CONTAINING 4.8e-41
    HMMSmart Ankyrin repeat 0.00071
    HMMSmart Ankyrin repeat 37
    HMMSmart Ankyrin repeat 11
    HMMSmart Ankyrin repeat 2600
    HMMSmart Ankyrin repeat 320
    HMMSmart Ankyrin repeat 1300
    HMMSmart Ankyrin repeat 0.011

    See the detailed result >

    AT4G03460.1

    Model type
    Protein coding
    Short Description
    Ankyrin repeat family protein
    Computational Description
    Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03500.1); Has 31827 Blast hits to 15474 proteins in 712 species: Archae - 44; Bacteria - 2495; Metazoa - 17236; Fungi - 2457; Plants - 2857; Viruses - 141; Other Eukaryotes - 6597 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR