K38220

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38220

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38220

Determination of introduced cDNA(s)

  • J033051L19 - Rice Full-length cDNAs - Original: J033051L19

    full reading [+] show sequence

    Nucleotide sequence: J033051L19 - full reading 
    GTTTCCCCCA ACGCCGCCTC TTTGGAGCGA CCTCCTGTCG ACGCCGCGTC 
    GGCCTCGCCC CCATCCCCAT AGCCATACCA GGCCTCAATC TTCCTCTCCA 
    ATCTCCTTGT GGCTAGTTCG GACAGCAGCA GCAGCGTGGG TGGTGCCGCT 
    GCGATTCCGG AGGAGGGGGC GGTAGTTCGG AGGCGGCGCG ATGAGGTTGG 
    AGAAGTGCTG GTTCTGCTCG TCCACCGTCT ACCCCGGCCA CGGCATCCAG 
    TTCGTCCGGA ACGACGCCAA GATCTTTCGC TTTTGCCGGT CAAAATGTCA 
    TAAAAATTTC AAGATGAAGA GGAATCCTCG TAAGGTTAAA TGGACAAAAG 
    CGTACAGGTG CTTGCATGGG AAGGACATGA CACAGGACTC CACCTTTGAG 
    TTTGAGAGGA AAAGGAACAG GCCAGAGCGC TATGACCGGA ATGTCACTGA 
    GCAAACACTT AAGGCTATCT CTCTTATTAC AAAGATTAGA CATGAACGGC 
    AGAAGAAACA TATTACAGAG AGGCAAAAAC AGGGTAAGAC AAAGCAACGG 
    GAGAGGGATG CTAAGGAGTT GGAACAGGAT ATTCAAATGC TTCCAAAGAA 
    GGTTACCCTA TCAACACAAA AAACAAAAGT CGTGGTTAAA GTTTCCCAGC 
    AGCAGACAGA AGAGAATCTT ATGGAAGAGT AATGAAATGG AATCAAGTTT 
    TGCATGTTGT TATGTAGGAC TGTGTTTCAT CAAATCGTTA CTATGAACGG 
    TGTATTTGAC TGGGTACCAG CAAAGTTTTG CACCGACCGT CTGGTTTGTG 
    ACTTCCAGCT ATCTTATAGT ATCAATAGTA TTGATGGCTT TGTGAACTGT 
    TAAAAGGATG TCTATTTTTA AGATTAAATT GCATATTGCA CAACCTTAAT 
    CGTAATTTAT TCTACGAATG CTAGATTTTT GCC

    Gene models with high sequence identity

    1. AT2G44860.2 [+] show detail - Ribosomal protein L24e family protein
      E-value: 3e-58; Score: 222.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart TRASH 7e-12
    HMMPfam Ribosomal protein L24e 5.3e-31
    Gene3D Ribosomal protein L24e 4.3e-27
    HMMPanther gb def: Putative ribosomal protein L30 (Fragm 2.2e-82
    HMMPanther Ribosomal protein L24e 2.2e-82
    superfamily Glucocorticoid receptor-like (DNA-binding dom 2.1e-22
    PatternScan Ribosomal protein L24e 0

    See the detailed result >

    AT2G44860.2

    Model type
    Protein coding
    Short Description
    Ribosomal protein L24e family protein
    Computational Description
    Ribosomal protein L24e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988), TRASH (InterPro:IPR011017); BEST Arabidopsis thaliana protein match is: Ribosomal protein L24e family protein (TAIR:AT3G53020.1); Has 1527 Blast hits to 1527 proteins in 399 species: Archae - 307; Bacteria - 5; Metazoa - 446; Fungi - 310; Plants - 198; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR