K38233

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38233

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38233

Determination of introduced cDNA(s)

J033023N08 - Rice Full-length cDNAs - Original: J033023N08

full reading [+] show sequence

GGGCAACCAC CCAAGAAAAA GAAAAACAGA GGAGTCGAAG AAAAAGGATA 
GCTTCAGTAA AGCCTAGCAA AGCGCCCATC AGAAACCCTA GCAGGAGCGC 
CGCCGCCGCC GCCGCCGCCC GCCGTCGTCA TCCTCCCTCT CGCCCTTTCA 
GGTCCCCAGC CCGCCGCGCC GCGGATCGAG TCGCCGTGTG AAGAAGGCCA 
GCGTCACCAT GGCGGACGAG GAGCAGGTGG AGAGGAAGGA GGAGGTCTCC 
GAGCTTACTC CTTTTGACCC AACCAAGAAA AAGAAGAAGA AGAAGGTTGT 
GATCCAAGAT CCATCTGATG AGGTGGATAA GTTGGCAGAG AAAACTGAGA 
GCTTGACAGT CGCTGAGACT GGTGAGCCAA GTTTTACAGG CATGAAAAAG 
AAGAAGAAGA AGCATGTGGA GCATGATACA TCTCTTACTG AAGCTGGAGA 
TGGTGAAGAT GCTATAGATG ATCAAATCGG AGAGGATGAA GAAGGAGAAG 
GGATTGTGCT TGGAGGTGCA ACTCGATACC CTTGGGAAGG AACTGACAGA 
GATTATAAAT ATGAAGAGCT GCTTGGCAGA GTATTTAATA TCCTGCGTGA 
GAATAATCCT GATCTTGCTG GTGATAGACG AAGAACTGTT ATGAGGCCTC 
CTCAAGTTCT TAGGGAAGGC ACAAAGAAGA CAGTTTTTGT GAACTTCATG 
GATTTGTGCA AAACAATGCA TAGGCAACCT GAACATGTGA TGATGTTTTT 
ACTTGCTGAG ATGGGAACAA GTGGATCCCT TGATGGGCAA CAAAGATTGG 
TTATAAAAGG AAGATTTGCT CCTAAAAACT TTGAAGCCAT ACTTAGGAGA 
TATATCAATG AGTATGTCAT ATGCAATGGG TGCAAGAGTC CTGATACCAT 
CCTTTCTAAG GAGAATAGGT TGTTCTTCCT TCGTTGCGAA CAGTGTGGTT 
CTTCAAGATC TGTTGCTCCT ATCAAGGCTG GATTCGTTGC CCAAGTTGGT 
CGTCGGAAGG CTGGAACCTA AGTTAAACGT CCACCCTGCT CAGAGCCTCG 
GATACACTCC CCAATCATCG CTACAAAAAC CTAATTTGCC GATTTACAAC 
AATTATTGTC CAGTTTTCAC TGTGTCTACA CCGTTTTGTG TATTTGTGAC 
CGTAACTCTG CTTCCAACTC TGCTGTGAAT TTCAGTTTTA TCCGAGACCA 
TGAGGATCAA TGTTTGCGGC C

Gene models with high sequence identity

AT5G20920.3 [+] show detail - eukaryotic translation initiation factor 2 beta subunit
E-value: 2e-87; Score: 319.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Translation initiation factor IF2/IF5	3.6e-70
superfamily	Translation initiation factor IF2/IF5, N-terminal	1.6e-38
superfamily	Translation initiation factor IF2/IF5, zinc-binding	1.2e-11
HMMPanther	EUKARYOTIC TRANSLATION INITIATION FACTOR	2.5e-98
HMMPfam	Translation initiation factor IF2/IF5	1.4e-48

See the detailed result >

AT5G20920.3

Model type: Protein coding
Short Description: eukaryotic translation initiation factor 2 beta subunit
Curator Summary: protein synthesis initiation factor eIF2 beta
Computational Description: eukaryotic translation initiation factor 2 beta subunit (EIF2 BETA); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT3G07920.1); Has 1323 Blast hits to 1320 proteins in 358 species: Archae - 271; Bacteria - 0; Metazoa - 350; Fungi - 277; Plants - 186; Viruses - 4; Other Eukaryotes - 235 (source: NCBI BLink).
Link: InterPro Scan - TAIR