K38240

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38240

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38240

Determination of introduced cDNA(s)

  • J013071A13 - Rice Full-length cDNAs - Original: J013071A13

    full reading [+] show sequence

    Nucleotide sequence: J013071A13 - full reading 
    GGCAGCGAAC CAAGCCCAAC AACACACGGC GCCGCCCACC CATCCACACA 
    CCCACCGGCA CACGCAACGC CATCATCGTC GCTCGTAGCA GCAGTAGCGT 
    ACCACACTTC GCACCGCGAT CGTCCGTGTT TGTGTCGTCC ACGGGAAGGG 
    ACCGAGAGGC TTGGAGGAAA GGAGGGGAGA CTCACTCGGC ATGGATTTGT 
    ACGGCGCGGC GGCGGGCGGG GGACCGGTGG CGAGGCGACC GTGGAGCAAG 
    GTGGAGGACA AGGTGTTCGA GAGCGCGCTG GTGCTGTGCC CGGAGGACGT 
    CCCCGACCGG TGGGCGCTCG TCGCGGCGCA GCTCCCAGGG CGCACGCCGC 
    AGGAGGCCTT GGAGCACTAC CAGGTGCTCG TCGCCGACAT CGATCTCATC 
    ATGCGCGGCG AGGAGCGGCG CCGCGGCGTA CCCTGGTCCG AAGACGAGCA 
    CAGGTTGTTT CTCGAGGGGT TGGACAGGTA CGGGCGGGGA GACTGGAGGA 
    ACATCTCGCG GTTCTCGGTG AGGACGCGGA CGCCGACGCA GGTGGCGAGC 
    CACGCGCAGA AGTACTTCAT CCGGCAGGCC AACGCCGGCG CCCGCGACTC 
    CAAGCGCAAG AGCATCCATG ACATCACCAC CCCTTGACCA GCGTCGGCGA 
    CGGCGACCCA CCCCCTTTCT TTGCAACTCT TTGGATTAAG TGAAACAAGC 
    AAGGGGTAGG CGATGACGTG TACATTATAT CCTACACCAC AACATAGGCA 
    AGTAGTACTG TCAAACCGTT TGTCACTTGG GGCTCTCTGA TCCATAACCG 
    TGGACGGCCT ACTTGCCGGA AACAGAGGCT GTTGAGAGCT CCGGTCGGCA 
    CACGGTTTGG GCTTTAGGTT TTTCAGCATT AATTAGGATT AGCTAAGTCA 
    GGGACTAATG GGGTTTGACG TGGCAACGTC GTGTCTAGGT TTGGTTGATG 
    CAGACGAAGA TGTCACTGTT AATATGGGTT TTGTGCTTTT GTTTTGATGA 
    ATGATGCTGT CGAAATCATT TTACATAGCC

    Gene models with high sequence identity

    1. AT5G04760.1 [+] show detail - Duplicated homeodomain-like superfamily protein
      E-value: 4e-33; Score: 139.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 3.7e-21
    HMMPanther ZUOTIN RELATED FACTOR 4 4e-06
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 4e-06
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 7.467
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 18.866
    HMMPfam Myb, DNA-binding 1.2e-05
    HMMPfam Myb, DNA-binding 8.6e-11
    HMMSmart SANT, DNA-binding 5e-06
    HMMSmart SANT, DNA-binding 3.3e-10
    superfamily Homeodomain-like 6.6e-16
    superfamily Homeodomain-like 3.8e-10

    See the detailed result >

    AT5G04760.1

    Model type
    Protein coding
    Short Description
    Duplicated homeodomain-like superfamily protein
    Computational Description
    Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G08520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR