K38247

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38247

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38247

Determination of introduced cDNA(s)

  • J023042N11 - Rice Full-length cDNAs - Original: J023042N11

    full reading [+] show sequence

    Nucleotide sequence: J023042N11 - full reading 
    GGTACTCAAG CCGGAGGCAG CACACTGCAA CTTAAGTTTT TCTATAGCTC 
    CTAGCAAGCT AGCAATGGCT CCCTCGGTGA TGGCTTCGTC GGCCACCTCC 
    GTGGCTCCCT TCCAGGGGCT CAAGTCCACT GCGGGCCTCC CGGTGAACCG 
    CCGCTCCAGC AGCTCGAGCT TTGGCAACGT CAGCAATGGC GGAAGGATCA 
    GATGCATGCA GGTGTGGCCG ATTGAGGGCA TTAAGAAGTT CGAGACTCTG 
    TCGTACTTGC CGCCATTGAC AGTGGAGGAC CTTTTGAAGC AGATCGAGTA 
    CCTGCTCCGA TCTAAGTGGG TGCCTTGCTT GGAGTTCAGC AAGGTCGGAT 
    TCGTCTACCG TGAGAATCAC AGATCACCCG GATACTATGA CGGTAGGTAC 
    TGGACCATGT GGAAACTGCC CATGTTTGGA TGCACCGATG CCACCCAAGT 
    GCTCAAGGAG CTCGAGGAGG CAAAGAAGGC ATACCCTGAT GCCTTCGTTC 
    GCATCATTGG CTTTGACAAC GTTAGGCAGG TGCAGTTAAT CAGCTTCATC 
    GCGTATAAGC CACCGGGTTG CGAGGAGTCA GGCGGCAACT AAGCGCTTTC 
    GTTCCTTCGT GCATGTTCTT TCTTTTTCTT TTTTTTTTTG TGTGTCCGTG 
    TTAAGCTGCA CGTAATTGTT CTCTCGCGCT CCGACCTGCC GTTGTTGCAA 
    GAGTACTACT ACAACTATCG GTCTATCGTT CGGTGACGGT GAGACAGGGC 
    ACGTGAATGC AAGATCTCCG GCTATACACA CGTACTCATG TAATATGATG 
    CCTAGAGCAT ATCTGAATCC GTCGACAATG AAATTTTGGT TTTGC

    Gene models with high sequence identity

    1. AT1G67090.1 [+] show detail - ribulose bisphosphate carboxylase small chain 1A
      E-value: 1e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribulose bisphosphate carboxylase, small chain 7.1e-50
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    HMMPfam Ribulose bisphosphate carboxylase, small chain 1.2e-38
    HMMPfam RbcS 2.7e-07
    Gene3D Ribulose bisphosphate carboxylase, small chain 6.5e-54

    See the detailed result >

    AT1G67090.1

    Model type
    Protein coding
    Short Description
    ribulose bisphosphate carboxylase small chain 1A
    Computational Description
    ribulose bisphosphate carboxylase small chain 1A (RBCS1A); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding; INVOLVED IN: carbon fixation, response to cold, response to blue light, response to red light, response to far red light; LOCATED IN: in 10 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1998 Blast hits to 1975 proteins in 459 species: Archae - 0; Bacteria - 424; Metazoa - 0; Fungi - 0; Plants - 969; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR