K38307

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38307

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38307

Determination of introduced cDNA(s)

  • J013000F01 - Rice Full-length cDNAs - Original: J013000F01

    full reading [+] show sequence

    Nucleotide sequence: J013000F01 - full reading
    GCTTCCTCTC CTCTTCCTCC CAAGAATCCC CATAGCTCAA GCAAAGGGAG 
    AGAGCAGCAG CAGCAAGAGG AGCACGCGGG GAGCTAGCTA GCTCCGCCGC
    CGCCGACGAG CTCCGGCGGC TCGCCGTTAT CCGCTCGCTG ATCGAGCCGT
    GTGCGGGTGA GAAAGAAAAA GAAAAAAAAA AGATCGCGCC TTTTTGGCGG
    CTTCTTGGGG TGTGAATCCA CGGTTTCCCC GGGGTAGGAT CTTGATGGGG
    CTCGAGGAAG GCGGCGCGAT GAGGGCGCTG ATGCGGCGGA AGCAGGTGGA
    CTCCGACCGG GTCCGCGCCG CCGGCGGCCA CCAGCTCGCC AAGGAGCTCT
    CCGTTACGCA GCTCGTCGCG ATTGGTGTTG GTTCAACAAT TGGAGCTGGA
    GTATATGTTC TTGTGGGAAC AGTTGCTCGG GAGCATGCTG GGCCGGCATT
    GACACTTTCA TTTCTGATAG CTGGAGTGGC AGCTGCACTC TCAGCTTTCT
    GTTATGCAGA GCTTGCTAGT CGCTGCCCTT CTGCAGGAAG TGCCTACCAT
    TATTCGTACA TCTGCGTTGG CGAAGGAGTT GCATGGCTGA TTGGTTGGGC
    ATTGATACTG GAATACACCA TCGGCGGATC AGCTGTTGCC CGTGGCATTT
    CTCCCAATCT GGCTTTATTT TTTGGAGGAC AGGATAGTCT ACCATGGTTT
    TTAGCACGCC ATGAGCTTCC ATGGTTTGAT GTTGTTGTCG ATCCTTGTGC
    GGCTTTCCTG GTTCTCGTTG TCACCGCCTT GCTATGCAAG GGGATAAAAG
    AGAGCTCATT TGTACAAGGA GTTGTGACAG TCCTAAATTG CTTCGTGATG
    CTATTTGTTA TTATAGCCGG CAGTTACATT GGCTTCCAAA CAGGATGGGT
    CGGCTATAAG GTGGCTGGCG GGTTTTTCCC TTATGGGGCG AACGGAATGC
    TTGCTGGGTC AGCAACTGTT TTCTTTGCCT ACATAGGCTT TGATTCAGTT
    GCTAGCACTG CCGAGGAGGT GAAAAATCCC CAACGAGATC TGCCACTGGG
    AATAGGAACA GCATTGTCAG TTTGCTGTTC CTTATACATG TTGGTTTCAG
    TTGTTATCGT TGGTCTGGTA CCATATTTCG CTATGGACCC AGATACCCCT
    ATATCATCAG CCTTTGCAAG ACATGGGATG CACTGGGCCA TGTACCTTGT
    TACAACTGGT GCTGTTCTTG CTCTTTGCTC AACCTTGATG GGATCGATTC
    TGCCACAGCC AAGAATATTG ATGGCCATGG CACGCGATGG GCTTTTGCCA
    TCCTTCTTCT CTGATGTCAA CCAGCGGACA CAAGTTCCTG TCAAGAGCAC
    AATTGTTACT GGCATATGTG CAGCTTGTCT GGCCTTCTTC ATGGATGTGT
    CACAACTGGC AGGAATGGTC AGTGTGGGCA CACTCCTTGC ATTCACTATA
    GTTGCTGTGT CCATCTTGAT CCTCAGATAT GCTCCTCCAG ATGAGGTACC
    CCTGCCATCT TCTCTGGAAG CGTCATTCCG TTTGAGCCAA GAATATGATG
    AGGAAAAGGT TAGGGGTCCT CCTGTAGATG CGAATCATGA ACAGTTGTCA
    TCTGTGGTAG AATCAATAAA TGACACCCTT ATCGAGAAGA AGCAAGACAC
    AAGTGTGGAG GAGTCAAAGC GTCGGAAAGC AGCTGTTTGC AGCATATCAT
    CTGTATGTGT AGGGGTTGTG GTCCTCACAA CTTCAGCTTC TTTCACATTC
    TTGCCATTCC TTTTGCGATG CTTCTTCTGT GTTTTTGGTG GCCTACTCCT
    CCTAGCCGGT CTCGGTGTCC TCTGCTATAT CGACCAAGAT GACGGGAGGC
    ACTCATTTGG TCACTCTGGA GGATTCATCT GCCCCTTCGT TCCGTTGTTG
    CCGGTGATGT GCATCCTCGT GAACACATAC TTGTTAGTAA ACTTGGGTGG
    AGGGACATGG ATGAGAGTTG GGGTATGGCT GGTAATGGGA GTATTCGTGT
    ACATTTTCTA TGGCCGGACC CACAGCTCAT TGACCGACGT GGTGTATGTT
    CCGGTGGCGC AAGCGGAAGA GATATACGGT TCATCATCTT CATCAGGATT
    TGTGGCCTAG GTAAGGAGCA GAGTACCAAA GCCTTGAGTG ATGAAATGCT
    CCAAAATCAA TTTTACCACA CTTTGAACAA ACCTGGCTGA AAGGGACTCC
    TGCTGCTGCG TTCTGTATTG CATGCCAGGC ATATGGGTTT GAAGAATTCA
    ATTCATATAT TGATTTTTAA ATTGTATAAA TTATAGTGTA AGGTCATATT
    TCGTATAAGC ACCTAGTTGA ATGAATGTGA ATATTAAATA GATATATAAT
    GAAGATAAGG TCTGTAATAT GTGTAAATTC ACTAGAGTAT ATCCCAGCTT
    CTGCTGGGAA AATTCATATT TCCATGTACC TTTTGCACTC GAGGTCTTCT
    TGAGTGGGAA ATGCTGAAGA CCTTGGTCAG ATCCTGCAAC ATGAATAAAG
    TCAACACATT CCCATT

    Gene models with high sequence identity

    1. AT1G58030.1 [+] show detail - cationic amino acid transporter 2
      E-value: 0; Score: 776.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Amino acid permease domain 5.5e-37
    HMMPanther Cationic amino acid transporter 1.3e-247
    HMMPanther Amino acid/polyamine transporter I 1.3e-247

    See the detailed result >

    AT1G58030.1

    Model type
    Protein coding
    Short Description
    cationic amino acid transporter 2
    Curator Summary
    Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast.
    Computational Description
    cationic amino acid transporter 2 (CAT2); FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 3 (TAIR:AT5G36940.1); Has 37076 Blast hits to 34712 proteins in 2307 species: Archae - 552; Bacteria - 29543; Metazoa - 2357; Fungi - 2838; Plants - 508; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR