K38323

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38323

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38323

Determination of introduced cDNA(s)

  • J013170B09 - Rice Full-length cDNAs - Original: J013170B09

    full reading [+] show sequence

    Nucleotide sequence: J013170B09 - full reading 
    GGGAGAAGAG GAATCTGTTG CTTTGCTTTG CTTCGGTTAG CTTCTTTCAC 
    AGCTAAACAA CGCCTTCTTT TTCCTCTTTT GATGATGATA CTGTTGTTTT 
    ACGTGTTCAG ATGATGGAGA AGGATCAGAG GAAGGGCGCC ATGCCGGTGA 
    AGAAGGGATC ATCGGCCAAC GCGGTCACCA AAGGCATCAC GAACAGAATC 
    CAAGCGAGGA GAGAGCGGAA GCTCGCACTG CAGCAAGATG TGGACAAGCT 
    GAAGAAGAAG CTGAGGCACG AGGAGAACGT CCACCGAGCC CTCGAGAGGG 
    CGTTCACGAG GCCGCTCGGC GCTCTGCCTC GCCTGCCGCC GTATCTGCCA 
    TCTCAAACAC TGGCGCTTCT CGCGGAGGTG GCGGTGCCGG AAGAAGAGGT 
    CGTCAGGCTC GAGGAGCAGG TGGTCAATTT CCGGCAAGGA CTCTACCAGG 
    AGGCCATAAT CTTCTCCTCG GCCAAGAACA CGAGCCTCCC CGGCGGCGAG 
    GGATGCGTGC CGGCGCAGCT CATGCCGTCG AGCCCGGTGC CGAACTCAGA 
    GGTCTCTCCG GCAAATTGTC ATTCTCCTCC TACTCGACCT TCAATGAACG 
    GGGTCGCCGG TGCAAAGCAA ACGCCGAGAA AGCCTTCTCC TTCGGCGGCG 
    GTGGCGCAAG ACGACCGCTC CGGCGCCGGG AAAGAGAACC AGTCGTGCAG 
    TAACACACCG GCTAGAAATT GTCGCCATTC GCCGCTGCTG CAGAAGGCAT 
    CAAAATCCAG ACTGCCGACA GCAGCAGCGC CTGAGAAACG CAGGGCTACT 
    GCTCAGACGA TTAGCACAGT GCCGGACCGT AAAAGGCTCG CAGACACTGT 
    CAGCAATAAT TCAGAAAAAG CTTCCCAAGA TGACTCGAGC GTGCCGAACA 
    GATTGTCGGA GGAACTGTTG AGATGCCTGC TCGCCATCTT CTCGCAGATG 
    GGCGGTTCAT CAGCAAGCGG CCAAGACGAG GAGCAGGCGG CATTGTCTCC 
    TTCGGTTTCA GGTTCTTGCG AGAGCTCAGA GGACGCATAC CCTCAAGATC 
    CTTATGGCAT ACTGGAATTC GGCACAAGAG ACGTTGGGTC ATACAAGCGA 
    TTCCATGTAA TCGACGCCAC CTCGTTCGAT CAGACGGCCA TGGAGAACGA 
    CACCATGCTT ACCCGGAAAC TCAAGGCTTT GATCCGGAGG CTTTCATCGG 
    TTGACCTGAC GGGGCTCTCC CATCAGCAGA AGCTGGCATT CTGGATCAAC 
    ATCTACAATT CGTGCATGAT GAATGCATTT CTCGAGCAAG GGATACCTAC 
    CACCCCTCAT ATGCTCGTGG CAATGATGCC GAAGGCGACA ATAAATGTGG 
    GTGGGCGCAC GCACAGCGCC ATGTCGATCG AGCATTTCAT CCTGCGGCTG 
    CCCTACAGCG TGAAGCATGT GAATCCTGGT GGAGTGACCA AGGGCGCCGC 
    CGACGACGTG ACGATGCGAG GCGTGTTCGG GCTGGAGTGG CCTGAGCCCC 
    TGGTCACCTT CGCGCTCTCC TGCGGCAGCT GGTCCTCCCC TGCTGTGAGG 
    GTGTACACGG CGCGGGGAGT GGAGGAGGAG CTGGAGGCGG CGAAGAGGGA 
    CTACCTGCAG TCGGCGGTGG TGGTGTCGGC GCCGGCGAAG GTGGCGATCC 
    CGAAGCTGCT GCACTGGTAC CTCCTCGACT TCGCCAAGGA CGTGGACTCC 
    CTCATGGACT GGGTGTGCCT CCAGCTACCG AGCGAGCTGC GGCAGAAGGC 
    GATGAGGATC GTGGAGGACG GCAGAAGGGG TGTCGCCGCC GAGTCGCGCC 
    GCATGCAGGT CCTGCCGTAC GAATTCAGAT TCAGGTACCT GCTGGCCTCA 
    TGAAGAGAGG CCAGTGAGTA GCAGCAATCA GCGAGTGAAT TCGAGGGTGT 
    TTTACTGCAC CTTGTACACA GGCTTCCAAT AATTGTGAGT TTTGTTCTTC 
    GGTGATGTGA ATGAATGAAA GGAAGT

    Gene models with high sequence identity

    1. AT4G37080.1 [+] show detail - Protein of unknown function, DUF547
      E-value: 2e-104; Score: 377.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther UNCHARACTERIZED 5.8e-87
    HMMPfam Protein of unknown function DUF547 2e-36

    See the detailed result >

    AT4G37080.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF547
    Computational Description
    Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2); Has 1854 Blast hits to 1696 proteins in 329 species: Archae - 6; Bacteria - 397; Metazoa - 313; Fungi - 62; Plants - 588; Viruses - 2; Other Eukaryotes - 486 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR