K38333

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38333

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38333

Determination of introduced cDNA(s)

  • J023077A12 - Rice Full-length cDNAs - Original: J023077A12

    full reading [+] show sequence

    Nucleotide sequence: J023077A12 - full reading 
    GAGGAGACGC TTTGCCGAAT TGCCGTGGCC TCGCGGCACT CCCTCCTCTC 
    TCGCAGACTC GCAGTAGTAT GCTAGGGATG AGAATATGAG ATGCCTCTCC 
    CAATTCATGG CGCCGCCGTC CGTGGCACCC TGTCCCGCGC GTGTCCTCCT 
    CGTCTCGACC CCATCCCCGC CTTCTCTCTC CCGCCGCCGC CCGGCAGGTC 
    GCCGCTGCGG TGGCGGGGAC GGGGGCGCGC GCCTCCGGAC CATCCGATGC 
    GGCGCGGCGA CCGAGGAGGA GGACGGGGAC CGGCGGGGTG AGCGGGTGGA 
    GGCGGCCTGG GAGGAGGAGG TGGCGGCGCC CGGCCGTGAC CTCGTCACGC 
    TCGCCGCCTG CCTCGTCGGG CTCCTCAGTG GCGTCTCCGT CGTCCTCTTC 
    AACCTCTCGG TTCATGAAAT ACGTGATCTC TTTTGGGACG GCATACCATT 
    GAGAGGCGCT TCATGGCTAA GGGAGGAGTC CATCGGTGAA ATCTGGCAGA 
    GAGTGATACT TGTTCCAGTC AGTGGAGGCA TTATAGTTGG AGTGTTTAAC 
    ACATTAAGAA GTTCTATAGC AACCAACTCA AATGACACTA TGTCTAAGAT 
    AAAAGGTGCC TTTAGGCCAT TTTTGAAAGC CATGGCAGCA TCTTTTACTC 
    TTGGAACTGG AAATTCTTTG GGGCCTGAGG GTCCAAGTGT GGAGATTGGT 
    TCATCTATAG CCAAAGGATT TGGAAATGTG TTTAAATTGG AAGGAGGGAA 
    AAAACTTTCT CTTGTGGCAG CTGGATCAGC AGCTGGAATC GCATCAGGTT 
    TTAATGCTGC TGTTGCCGGG TGCTTTTTCG CCGTGGAATC TGTTTTGTGG 
    CCTACTTCTG TTGACTCTTC ATCCCTTTCC AACTCAACAC CTATGGTGAT 
    ACTCAGTGCA GTGATAGCGT CTGTTGTTTC AGAGATTGGT CTTGGTTCTG 
    ATCCTGCTTT TACCGTTCCA GAATATGATT TCCGCTCGCC AACAGAGATT 
    GAAAGTATGA GGATATTTAC ATGACTTAAT AAATGTCAGA ACTTCCTCTA 
    TATCTTTTGC TGGGCATCTT CTGTGGGTTG GTGTCTACTA CACTATCTAG 
    GTGTACAGCA CTTTCTATGG AGATAGTTCA AAGTTTACAA ACGGCAACCG 
    GATTACCAAA GGCTGCATCT CCTGCCTTGG GTGGCCTTAT TGTTGGTCTT 
    CTAGCCCTTG TATACCCTGA AGTTCTTTAT TGGGGCTTTG AAAATGTTGA 
    TATTTTGCTG GAATCACGAC CATTCACAAG TGGACTCTCA GCAGCTGTAT 
    TGGTTCAGCT CATTGGAGTA AAAGTATTGG CGACATCTTT GTGCAGGGCT 
    TTTGGATTGG TTGGAGGCTA TTATGCACCA TCCCTTTTTA TTGGTGCAGC 
    TACAGGCATG GCGTATGGAA AGGTCGTGAG GTTTACATTT ACTGGCCCGG 
    ATTCACTGTT CCAAATCCCG TTCCTAGATG TGGCGTCACC TCAAGCATAT 
    GGCCTGGTAG GTATGGCAGC CACGCTTGCT GGTGTATGCA AGGTGCCTCT 
    TACATCTGTC CTCCTACTGT TTGAGCTTAC TCAGGACTAT CGTATAGTTT 
    TACCTTTGCT TGGTGCTGTT GGAGTATCAT CTTGGATTGC TTCTCCCCAG 
    AGGTTCTCTA GGAGCAATAG GAGTAAGCCG GATTCCTCAG AGGTGAAATC 
    AAGTAATTTT AAACAGGAAA AAAGTGTGCC CTCCCAGACA CAAGGAGCTT 
    CTGTGGATAC AGATAAGCCT ATTACCGACC TATGTAAGCT TGAAAGTTCA 
    CTGTGTGTCT ATGATGCCAA GCATGAGAAT TTTCAGGAAA ATCTTACTGT 
    TGCAGAGGCT ATGAAGACTA AATATATTTC TGTTTCAAAG ACAACTCCAG 
    TAGTTGAGGC ACTAAGTCTT ATGCTTGTGG AAAAGCAACC GTTTGTTATG 
    ATAATTGAGA GCAACAGATC TCTAATAGGC TTGGTAACTC TCAAAGATAT 
    CCAGGATTTC TGCAGAACTG CGAAAACTAC CAGGGTACAG ACTGAGGAAC 
    CTGTACAAAC TTATGTTTGT GGAGCCGTTA AGTGTAAAAT GTGGCCTGTG 
    ACACCTCAGA CATCTCTAAC TACTGTTGAA AAGATCATGG ATTCTTATGG 
    AGTGGATCAA CTTCCAGTAG TTTCAGAACA TGTTGATCGT CAAGATAGAG 
    GACTTTTGGT TGGTTTTGTA GATGAAGAAG GCATTGCCAT TGCTCGAAGA 
    GCTGTAGCAA CAAAAGATCT TTTGAGTTTT ACATCTGAGA TAAAGGGGGA 
    TAGATGACTT AAAAGTAGAG CTGGTATTAC ACAGTTCTGA TATTTCATCC 
    CAGAACTGGG AGCTGTTCAG AATTGCCCAG CATCTGTGTA CAAGTGGCCA 
    ACGCTTCGGA CTCTTTTAAC ATTTTTACCA GGTTGTTTTG TTAACTTCAG 
    AATGTAACTC AGAAACGTAC TGTTGAAGGG CCTTTAGTTT TGCACAAGTG 
    GATATATGCG GTTTTATTGC ACC

    Gene models with high sequence identity

    1. AT4G35440.1 [+] show detail - chloride channel E
      E-value: 3e-143; Score: 186.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther VOLTAGE-GATED CLC-TYPE CHLORIDE CHANNEL ERIC 1.5e-62
    HMMPanther Chloride channel, voltage gated 1.5e-62
    HMMPanther VOLTAGE-GATED CLC-TYPE CHLORIDE CHANNEL ERIC 3.2e-92
    HMMPanther Chloride channel, voltage gated 3.2e-92
    FPrintScan Chloride channel, voltage gated 1.6e-08
    FPrintScan Chloride channel, voltage gated 1.6e-08
    HMMSmart Cystathionine beta-synthase, core 14
    HMMSmart Cystathionine beta-synthase, core 1.4
    ProfileScan Cystathionine beta-synthase, core 10.241
    ProfileScan Cystathionine beta-synthase, core 8.324
    HMMPfam Chloride channel, voltage gated 2.6e-38
    HMMPfam Cystathionine beta-synthase, core 0.00011
    HMMPfam Cystathionine beta-synthase, core 0.0031
    HMMPfam Chloride channel, voltage gated 7.6e-25
    Gene3D Chloride channel, core 8e-36
    Gene3D Chloride channel, core 1.6e-31
    superfamily Chloride channel, core 1.1e-36
    superfamily CBS-domain 1.2e-08
    superfamily CBS-domain 0.00079
    superfamily Chloride channel, core 1.2e-33

    See the detailed result >

    AT4G35440.1

    Model type
    Protein coding
    Short Description
    chloride channel E
    Curator Summary
    Enclodes a choride channel protein that is localized to the thlakoid membrane.
    Computational Description
    chloride channel E (CLC-E); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel F (TAIR:AT1G55620.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR